Nucleotide-depleted F1 domain of FoF1-ATPase from Bacillus PS3, state1
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7xkh
Q-score: 0.545
Nakano A, Kishikawa JI, Nakanishi A, Mitsuoka K, Yokoyama K
Pnas Nexus (2022) 1 pp. pgac116-pgac116 [ DOI: doi:10.1093/pnasnexus/pgac116 Pubmed: 36741449 ]
- Fof1 from bacillus ps3 (530 kDa, Complex from Bacillus sp. PS3)
- Atp synthase gamma chain (31 kDa, Protein from Bacillus sp. PS3)
- Atp synthase subunit beta (53 kDa, Protein from Bacillus sp. PS3)
- Hydrogenphosphate ion (95 Da, Ligand)
- Atp synthase epsilon chain (14 kDa, Protein from Bacillus sp. PS3)
- Atp synthase subunit alpha (54 kDa, Protein from Bacillus sp. PS3)
F1 domain of epsilon C-terminal domain deleted FoF1 from Bacillus PS3,state1,nucleotide depeleted
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7xko
Q-score: 0.495
Nakano A, Kishikawa JI, Nakanishi A, Mitsuoka K, Yokoyama K
Pnas Nexus (2022) 1 pp. pgac116-pgac116 [ Pubmed: 36741449 DOI: doi:10.1093/pnasnexus/pgac116 ]
- Hydrogenphosphate ion (95 Da, Ligand)
- Atp synthase gamma chain (31 kDa, Protein from Bacillus sp. PS3)
- Atp synthase subunit beta (53 kDa, Protein from Bacillus sp. PS3)
- Fof1 from bacillus ps3 (530 kDa, Complex from Bacillus sp. PS3)
- Atp synthase subunit alpha (54 kDa, Protein from Bacillus sp. PS3)
F1 domain of epsilon C-terminal domain deleted FoF1 from Bacillus PS3,state1,unisite condition
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7xkp
Q-score: 0.545
Nakano A, Kishikawa JI, Nakanishi A, Mitsuoka K, Yokoyama K
Pnas Nexus (2022) 1 pp. pgac116-pgac116 [ Pubmed: 36741449 DOI: doi:10.1093/pnasnexus/pgac116 ]
- Magnesium ion (24 Da, Ligand)
- Atp synthase gamma chain (31 kDa, Protein from Bacillus sp. PS3)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp synthase subunit beta (53 kDa, Protein from Bacillus sp. PS3)
- Fof1 from bacillus ps3 (530 kDa, Complex from Bacillus sp. PS3)
- Atp synthase subunit alpha (54 kDa, Protein from Bacillus sp. PS3)
F1 domain of FoF1-ATPase with the down form of epsilon subunit from Bacillus PS3
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7xkq
Q-score: 0.511
Nakano A, Kishikawa JI, Nakanishi A, Mitsuoka K, Yokoyama K
Pnas Nexus (2022) 1 pp. pgac116-pgac116 [ DOI: doi:10.1093/pnasnexus/pgac116 Pubmed: 36741449 ]
- Atp synthase gamma chain (31 kDa, Protein from Bacillus sp. PS3)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp synthase subunit beta (53 kDa, Protein from Bacillus sp. PS3)
- Atp synthase epsilon chain (14 kDa, Protein from Bacillus sp. PS3)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Fof1 from bacillus sp. ps3 (530 kDa, Complex from Bacillus sp. PS3)
- Atp synthase subunit alpha (54 kDa, Protein from Bacillus sp. PS3)
F1 domain of FoF1-ATPase with the up form of epsilon subunit from Bacillus PS3
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7xkr
Q-score: 0.569
Nakano A, Kishikawa JI, Nakanishi A, Mitsuoka K, Yokoyama K
Pnas Nexus (2022) 1 pp. pgac116-pgac116 [ DOI: doi:10.1093/pnasnexus/pgac116 Pubmed: 36741449 ]
- Fof1 from bacillus ps3 (530 kDa, Complex from Bacillus sp. PS3)
- Atp synthase gamma chain (31 kDa, Protein from Bacillus sp. PS3)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp synthase subunit beta (53 kDa, Protein from Bacillus sp. PS3)
- Atp synthase epsilon chain (14 kDa, Protein from Bacillus sp. PS3)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atp synthase subunit alpha (54 kDa, Protein from Bacillus sp. PS3)
V1EG of V/A-ATPase from Thermus thermophilus, state1-1
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7vai
Q-score: 0.558
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit g (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- Nucleotide-free v/a-atpase from thermus thermophilus, state1 (700 kDa, Complex from Thermus thermophilus HB8)
Nucleotide-free V1EG domain of V/A-ATPase from Thermus thermophilus, state1-2
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7vaj
Q-score: 0.544
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit g (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- Nucleotide-free v1eg domain of v/a-atpase from thermus thermophilus, state1-2 (500 kDa, Complex from Thermus thermophilus HB8)
Nucleotide-free V1EG domain of V/A-ATPase from Thermus thermophilus, state2
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 7vak
Q-score: 0.381
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- Nucleotide-free v1eg domain of v/a-atpase from thermus thermophilus, state2 (500 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit g (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
V1EG of V/A-ATPase from Thermus thermophilus, high ATP, state1-1
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7val
Q-score: 0.545
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- V-type atp synthase subunit g (13 kDa, Protein from Thermus thermophilus HB8)
- Magnesium ion (24 Da, Ligand)
- V1eg of v/a-atpase from thermus thermophilus, high atp, state1-1 (400 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Phosphate ion (94 Da, Ligand)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
V1EG of V/A-ATPase from Thermus thermophilus, high ATP, state1-2
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7vam
Q-score: 0.54
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Phosphate ion (94 Da, Ligand)
- V-type atp synthase, subunit g (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V1eg of v/a-atpase from thermus thermophilus, high atp, state1-2 (400 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)