Apo L-21 ScaI Tetrahymena ribozyme
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 7ez0
Q-score: 0.425
Holo L-16 ScaI Tetrahymena ribozyme
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 7ez2
Q-score: 0.485
Su Z, Zhang K, Kappel K, Li S, Palo MZ, Pintilie GD, Rangan R, Luo B, Wei Y, Das R, Chiu W
Nature (2021) 596 pp. 603-607 [ DOI: doi:10.1038/s41586-021-03803-w Pubmed: 34381213 ]
- Holo l-16 scai tetrahymena ribozyme s1 (2 kDa, RNA from Tetrahymena thermophila)
- Holo l-16 scai tetrahymena ribozyme s2 (1 kDa, RNA from Tetrahymena thermophila)
- Holo l-16 scai tetrahymena ribozyme (126 kDa, RNA from Tetrahymena thermophila)
- Holo l-16 scai tetrahymena ribozyme with substrates s1 and s2, and metal ions. (Complex from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
The 28-kDa Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome
Zhang K, Zheludev IN, Hagey RJ, Wu MT, Haslecker R, Hou YJ, Kretsch R, Pintilie GD, Rangan R, Kladwang W, Li S, Pham EA, Bernardin-Souibgui C, Baric RS, Sheahan TP, D Souza V, Glenn JS, Chiu W, Das R
bioRxiv (2020) [ DOI: doi:10.1101/2020.07.18.209270 Pubmed: 32743589 ]
Kappel K, Zhang K, Su Z, Watkins AM, Kladwang W, Li S, Pintilie G, Topkar VV, Rangan R, Zheludev IN, Yesselman JD, Chiu W, Das R
Nat Methods (2020) 17 pp. 699-707 [ Pubmed: 32616928 DOI: doi:10.1038/s41592-020-0878-9 ]
- Rna (130-mer) (42 kDa, RNA from synthetic construct)
- Atp-ttr-3 with amp (42 kDa, Complex from synthetic construct)
Kappel K, Zhang K, Su Z, Watkins AM, Kladwang W, Li S, Pintilie G, Topkar VV, Rangan R, Zheludev IN, Yesselman JD, Chiu W, Das R
Nat Methods (2020) 17 pp. 699-707 [ Pubmed: 32616928 DOI: doi:10.1038/s41592-020-0878-9 ]
- Rna (130-mer) (42 kDa, RNA from synthetic construct)
- Apo atp-ttr-3 (42 kDa, Complex from synthetic construct)
Apo F. nucleatum glycine riboswitch
Kappel K, Zhang K, Su Z, Watkins AM, Kladwang W, Li S, Pintilie G, Topkar VV, Rangan R, Zheludev IN, Yesselman JD, Chiu W, Das R
Nat Methods (2020) 17 pp. 699-707 [ Pubmed: 32616928 DOI: doi:10.1038/s41592-020-0878-9 ]
- Apo f. nucleatum glycine riboswitch (56 kDa, Complex from Fusobacterium nucleatum)
- Rna (171-mer) (55 kDa, RNA from Fusobacterium nucleatum)
F. nucleatum glycine riboswitch with glycine
Kappel K, Zhang K, Su Z, Watkins AM, Kladwang W, Li S, Pintilie G, Topkar VV, Rangan R, Zheludev IN, Yesselman JD, Chiu W, Das R
Nat Methods (2020) 17 pp. 699-707 [ Pubmed: 32616928 DOI: doi:10.1038/s41592-020-0878-9 ]
- F. nucleatum glycine riboswitch with glycine (56 kDa, Complex from Fusobacterium nucleatum)
- Rna (171-mer) (55 kDa, RNA from Fusobacterium nucleatum)
Kappel K, Zhang K, Su Z, Watkins AM, Kladwang W, Li S, Pintilie G, Topkar VV, Rangan R, Zheludev IN, Yesselman JD, Chiu W, Das R
Nat Methods (2020) 17 pp. 699-707 [ Pubmed: 32616928 DOI: doi:10.1038/s41592-020-0878-9 ]
- Hc16 ligase product (113 kDa, Complex from synthetic construct)
- Rna (349-mer) (112 kDa, RNA from synthetic construct)
Kappel K, Zhang K, Su Z, Watkins AM, Kladwang W, Li S, Pintilie G, Topkar VV, Rangan R, Zheludev IN, Yesselman JD, Chiu W, Das R
Nat Methods (2020) 17 pp. 699-707 [ Pubmed: 32616928 DOI: doi:10.1038/s41592-020-0878-9 ]
- Hc16 ligase (110 kDa, Complex from synthetic construct)
- Rna (338-mer) (109 kDa, RNA from synthetic construct)
Kappel K, Zhang K, Su Z, Watkins AM, Kladwang W, Li S, Pintilie G, Topkar VV, Rangan R, Zheludev IN, Yesselman JD, Chiu W, Das R
Nat Methods (2020) 17 pp. 699-707 [ Pubmed: 32616928 DOI: doi:10.1038/s41592-020-0878-9 ]
- Apo sam-iv riboswitch (39 kDa, Complex from synthetic construct)
- Rna (119-mer) (38 kDa, RNA from Mycobacterium sp.)