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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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initial_angle_assignment_type:"MAXIMUM LIKELIHOOD" AND xref_links:"pdb" AND citation_journal_name:"ELIFE" AND release_date:[2021-01-01T00:00:00Z TO 2021-12-31T23:59:59Z] AND natural_source_ncbi_code:"246196"

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EMD-30945

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Cryo-EM structure of hybrid respiratory supercomplex consisting of Mycobacterium tuberculosis complexIII and Mycobacterium smegmatis complexIV in presence of TB47

Release date: Oct. 27, 2021
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 7e1x
Q-score: 0.513

Zhou S, Wang W, Zhou X, Zhang Y, Lai Y, Tang Y, Xu J, Li D, Lin J, Yang X, Ran T, Chen H, Guddat LW, Wang Q, Gao Y, Rao Z, Gong H

eLife (2021) 10 [ Pubmed: 34819223 DOI: doi:10.7554/eLife.69418 ]

Sample:

Cytochrome c oxidase polypeptide 4 (15 kDa, Protein from Mycobacterium smegmatis MC2 51)
Cardiolipin (1 kDa, Ligand)
Hybrid respiratory supercomplex consisting of mycobacterium tuberculosis complexiii and mycobacterium smegmatis complexiv in presence of tb47 (800 kDa, Complex from Mycolicibacterium smegmatis MC2 51)
5-methoxy-2-methyl-~{n}-[[4-[4-[4-(trifluoromethyloxy)phenyl]piperidin-1-yl]phenyl]methyl]pyrazolo[1,5-a]pyridine-3-carboxamide (538 Da, Ligand)
Cytochrome c oxidase subunit 2 (38 kDa, Protein from Mycobacterium smegmatis MC2 51)
Cytochrome c oxidase subunit ctaj (8 kDa, Protein from Mycobacterium smegmatis MC2 51)
Mycobacterium smegmatis (Complex from Mycolicibacterium smegmatis MC2 155)
Prokaryotic respiratory supercomplex associate factor 1 prsaf1 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 51)
Palmitic acid (256 Da, Ligand)
(2r)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (e)-octadec-9-enoate (717 Da, Ligand)
Heme c (618 Da, Ligand)
Mycobacterium tuberculosis complexiii (Complex)
(2r)-2-(hexadecanoyloxy)-3-{[(s)-hydroxy{[(1r,2r,3r,4r,5r,6s)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9s)-9-methyloctadecanoate (853 Da, Ligand)
Heme-a (852 Da, Ligand)
Cytochrome c oxidase subunit 1 (64 kDa, Protein from Mycolicibacterium smegmatis MC2 51)
Protoporphyrin ix containing fe (616 Da, Ligand)
Cytochrome bc1 complex cytochrome b subunit (61 kDa, Protein from Mycobacterium tuberculosis H37Rv)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Menaquinone-9 (785 Da, Ligand)
Cytochrome bc1 complex cytochrome c subunit (29 kDa, Protein from Mycobacterium tuberculosis H37Rv)
Cytochrome c oxidase subunit 3 (22 kDa, Protein from Mycobacterium smegmatis MC2 51)
Cytochrome bc1 complex rieske iron-sulfur subunit (46 kDa, Protein from Mycobacterium tuberculosis H37Rv)
Copper (ii) ion (63 Da, Ligand)
Uncharacterized protein msmeg_4692/msmei_4575 (15 kDa, Protein from Mycobacterium smegmatis MC2 51)

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EMD-24455

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Mycobacterial CIII2CIV2 supercomplex, Inhibitor free

Release date: Aug. 4, 2021
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7rh5
Q-score: 0.513

Yanofsky DJ, Di Trani JM, Krol S, Abdelaziz R, Bueler SA, Imming P, Brzezinski P, Rubinstein JL

eLife (2021) 10 [ DOI: doi:10.7554/eLife.71959 Pubmed: 34590581 ]

Sample:

Cytochrome bc1 complex cytochrome c subunit (23 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cardiolipin (1 kDa, Ligand)
Superoxide dismutase [cu-zn] (21 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
(2s)-1-(hexadecanoyloxy)propan-2-yl (10s)-10-methyloctadecanoate (594 Da, Ligand)
Cytochrome aa3 subunit 2 (38 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Palmitic acid (256 Da, Ligand)
Putative conserved transmembrane protein (11 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
(2r)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (e)-octadec-9-enoate (717 Da, Ligand)
Respiratory supercomplex ciii2civ2sod2 from mycobacterium smegmatis (Complex from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cytochrome c oxidase subunit ctaj (8 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cytochrome aa3 subunit 3 (22 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Heme c (618 Da, Ligand)
Lpqe protein (16 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
(2r)-2-(hexadecanoyloxy)-3-{[(s)-hydroxy{[(1r,2r,3r,4r,5r,6s)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9s)-9-methyloctadecanoate (853 Da, Ligand)
Cytochrome c oxidase polypeptide 4 (15 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cytochrome bc1 complex cytochrome b subunit (59 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Heme-a (852 Da, Ligand)
Uncharacterized protein msmeg_4692/msmei_4575 (14 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Protoporphyrin ix containing fe (616 Da, Ligand)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Menaquinone-9 (785 Da, Ligand)
Cytochrome c oxidase subunit 1 (63 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cytochrome bc1 complex rieske iron-sulfur subunit (42 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Copper (ii) ion (63 Da, Ligand)

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EMD-24456

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Mycobacterial CIII2CIV2 supercomplex, inhibitor free, -Lpqe cyt cc open

Release date: Aug. 4, 2021
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7rh6
Q-score: 0.395

Yanofsky DJ, Di Trani JM, Krol S, Abdelaziz R, Bueler SA, Imming P, Brzezinski P, Rubinstein JL

eLife (2021) 10 [ DOI: doi:10.7554/eLife.71959 Pubmed: 34590581 ]

Sample:

Cytochrome bc1 complex cytochrome c subunit (23 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cardiolipin (1 kDa, Ligand)
Superoxide dismutase [cu-zn] (21 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
(2s)-1-(hexadecanoyloxy)propan-2-yl (10s)-10-methyloctadecanoate (594 Da, Ligand)
Respiratory complex ciii2civ2sod2 from mycobacterium smegmatis (Complex from Mycolicibacterium smegmatis MC2 155)
Palmitic acid (256 Da, Ligand)
Putative conserved transmembrane protein (11 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
(2r)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (e)-octadec-9-enoate (717 Da, Ligand)
Cytochrome c oxidase subunit ctaj (8 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cytochrome aa3 subunit 3 (22 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Heme c (618 Da, Ligand)
Lpqe protein (16 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
(2r)-2-(hexadecanoyloxy)-3-{[(s)-hydroxy{[(1r,2r,3r,4r,5r,6s)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9s)-9-methyloctadecanoate (853 Da, Ligand)
Cytochrome c oxidase polypeptide 4 (15 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cytochrome bc1 complex cytochrome b subunit (59 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Heme-a (852 Da, Ligand)
Uncharacterized protein msmeg_4692/msmei_4575 (14 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cytochrome aa3 subunit 2 (35 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Protoporphyrin ix containing fe (616 Da, Ligand)
Menaquinone-9 (785 Da, Ligand)
Cytochrome bc1 complex rieske iron-sulfur subunit (42 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Copper (ii) ion (63 Da, Ligand)
Cytochrome c oxidase subunit 1 (61 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))

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EMD-24457

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Mycobacterial CIII2CIV2 supercomplex, Telacebec (Q203) bound

Release date: Aug. 4, 2021
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7rh7
Q-score: 0.477

Yanofsky DJ, Di Trani JM, Krol S, Abdelaziz R, Bueler SA, Imming P, Brzezinski P, Rubinstein JL

eLife (2021) 10 [ DOI: doi:10.7554/eLife.71959 Pubmed: 34590581 ]

Sample:

Superoxide dismutase [cu-zn] (21 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Copper (ii) ion (63 Da, Ligand)
Cardiolipin (1 kDa, Ligand)
Cytochrome c oxidase polypeptide 4 (15 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Cytochrome c oxidase subunit ctaj (8 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Heme c (618 Da, Ligand)
Palmitic acid (256 Da, Ligand)
Protoporphyrin ix containing fe (616 Da, Ligand)
(2r)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (e)-octadec-9-enoate (717 Da, Ligand)
6-chloranyl-2-ethyl-n-[[4-[4-[4-(trifluoromethyloxy)phenyl]piperidin-1-yl]phenyl]methyl]imidazo[1,2-a]pyridine-3-carboxamide (557 Da, Ligand)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Cytochrome bc1 complex rieske iron-sulfur subunit (42 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
(2s)-1-(hexadecanoyloxy)propan-2-yl (10s)-10-methyloctadecanoate (594 Da, Ligand)
Cytochrome aa3 subunit 2 (35 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Cytochrome bc1 complex cytochrome b subunit (59 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Conserved transmembrane protein (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Respiratory complex ciii2civ2sod2 from mycobacterium smegmatis (Complex from Mycolicibacterium smegmatis MC2 155)
(2r)-2-(hexadecanoyloxy)-3-{[(s)-hydroxy{[(1r,2r,3r,4r,5r,6s)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9s)-9-methyloctadecanoate (853 Da, Ligand)
Lpqe protein (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Uncharacterized protein msmeg_4692/msmei_4575 (14 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Cytochrome c oxidase subunit 1 (61 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Menaquinone-9 (785 Da, Ligand)
Heme-a (852 Da, Ligand)
Cytochrome bc1 complex cytochrome c subunit (23 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Cytochrome aa3 subunit 3 (22 kDa, Protein from Mycolicibacterium smegmatis MC2 155)

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Showing 1 - 4 of 4. Page 1 of 1

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EMDB [4]

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