Human SMG1-8-9 kinase complex bound to a SMG1 inhibitor
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 7pw4
Q-score: 0.495
Langer LM, Bonneau F, Gat Y, Conti E
eLife (2021) 10 [ DOI: doi:10.7554/eLife.72353 Pubmed: 34698635 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Protein smg9 (57 kDa, Protein from Homo sapiens)
- Protein smg8 (109 kDa, Protein from Homo sapiens)
- Inositol hexakisphosphate (660 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 1-[4-[4-[2-[[4-chloranyl-3-(diethylsulfamoyl)phenyl]amino]pyrimidin-4-yl]pyridin-2-yl]phenyl]-3-methyl-urea (566 Da, Ligand)
- Smg1-smg8-smg9 kinase complex bound to a smg1 inhibitor (597 kDa, Complex from Homo sapiens)
- Serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1 (397 kDa, Protein from Homo sapiens)
Human SMG1-8-9 kinase complex with AlphaFold predicted SMG8 C-terminus, bound to a SMG1 inhibitor
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7pw5
Q-score: 0.357
Langer LM, Bonneau F, Gat Y, Conti E
eLife (2021) 10 [ DOI: doi:10.7554/eLife.72353 Pubmed: 34698635 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Protein smg9 (57 kDa, Protein from Homo sapiens)
- Protein smg8 (109 kDa, Protein from Homo sapiens)
- Inositol hexakisphosphate (660 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 1-[4-[4-[2-[[4-chloranyl-3-(diethylsulfamoyl)phenyl]amino]pyrimidin-4-yl]pyridin-2-yl]phenyl]-3-methyl-urea (566 Da, Ligand)
- Smg1-smg8-smg9 kinase complex bound to a smg1 inhibitor (597 kDa, Complex from Homo sapiens)
- Smg1,serine/threonine-protein kinase smg1,smg1,serine/threonine-protein kinase smg1,smg1,serine/threonine-protein kinase smg1,smg1,serine/threonine-protein kinase smg1 (397 kDa, Protein from Homo sapiens)
Human SMG1-8-9 kinase complex bound to a SMG1 inhibitor - SMG1 body
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 7pw6
Q-score: 0.539
Langer LM, Bonneau F, Gat Y, Conti E
eLife (2021) 10 [ DOI: doi:10.7554/eLife.72353 Pubmed: 34698635 ]
- 1-[4-[4-[2-[[4-chloranyl-3-(diethylsulfamoyl)phenyl]amino]pyrimidin-4-yl]pyridin-2-yl]phenyl]-3-methyl-urea (566 Da, Ligand)
- Smg1-smg8-smg9 kinase complex bound to a smg1 inhibitor (597 kDa, Complex from Homo sapiens)
- Serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1 (320 kDa, Protein from Homo sapiens)
- Inositol hexakisphosphate (660 Da, Ligand)
Human SMG1-9 kinase complex bound to a SMG1 inhibitor
Resolution: 3.59 Å
EM Method: Single-particle
Fitted PDBs: 7pw7
Q-score: 0.416
Langer LM, Bonneau F, Gat Y, Conti E
eLife (2021) 10 [ DOI: doi:10.7554/eLife.72353 Pubmed: 34698635 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Protein smg9 (57 kDa, Protein from Homo sapiens)
- Inositol hexakisphosphate (660 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 1-[4-[4-[2-[[4-chloranyl-3-(diethylsulfamoyl)phenyl]amino]pyrimidin-4-yl]pyridin-2-yl]phenyl]-3-methyl-urea (566 Da, Ligand)
- Smg1-smg9 kinase complex bound to a smg1 inhibitor (597 kDa, Complex from Homo sapiens)
- Smg1,serine/threonine-protein kinase smg1,smg1,serine/threonine-protein kinase smg1,smg1,serine/threonine-protein kinase smg1,smg1,serine/threonine-protein kinase smg1 (397 kDa, Protein from Homo sapiens)
Human SMG1-8-9 kinase complex bound to AMPPNP
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 7pw8
Q-score: 0.558
Langer LM, Bonneau F, Gat Y, Conti E
eLife (2021) 10 [ Pubmed: 34698635 DOI: doi:10.7554/eLife.72353 ]
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Protein smg8 (109 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Smg1,serine/threonine-protein kinase smg1,smg1,serine/threonine-protein kinase smg1,smg1 (397 kDa, Protein from Homo sapiens)
- Protein smg9 (57 kDa, Protein from Homo sapiens)
- Smg1-smg8-smg9 kinase complex bound to amppnp (597 kDa, Complex from Homo sapiens)
- Inositol hexakisphosphate (660 Da, Ligand)
Human SMG1-9 kinase complex bound to AMPPNP
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 7pw9
Q-score: 0.479
Langer LM, Bonneau F, Gat Y, Conti E
eLife (2021) 10 [ Pubmed: 34698635 DOI: doi:10.7554/eLife.72353 ]
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Protein smg9 (39 kDa, Protein from Homo sapiens)
- Inositol hexakisphosphate (660 Da, Ligand)
- Serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1,serine/threonine-protein kinase smg1 (397 kDa, Protein from Homo sapiens)
- Smg1-smg9 kinase complex bound to amppnp (492 kDa, Complex from Homo sapiens)
The cryoEM structure of LbpB from N. gonorrhoeae in complex with lactoferrin
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7n88
Q-score: 0.415
Yadav R, Govindan S, Daczkowski C, Mesecar A, Chakravarthy S, Noinaj N
eLife (2021) 10 [ DOI: doi:10.7554/eLife.71683 Pubmed: 34751649 ]
- Lactoferrin-binding protein b (78 kDa, Protein from Neisseria gonorrhoeae)
- Lactotransferrin (76 kDa, Protein from Homo sapiens)
- Bicarbonate ion (61 Da, Ligand)
- Complex between lactoferrin binding protein and lactoferrin (Complex)
- Lactoferrin binding protein (Complex from Neisseria gonorrhoeae)
- Fe (iii) ion (55 Da, Ligand)
- Lactoferrin (Complex from Homo sapiens)
Yeast CTP Synthase (URA8) tetramer bound to ATP/UTP at neutral pH
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7rkh
Q-score: 0.535
Hansen JM, Horowitz A, Lynch EM, Farrell DP, Quispe J, DiMaio F, Kollman JM
eLife (2021) 10 [ Pubmed: 34734801 DOI: doi:10.7554/eLife.73368 ]
- Uridine 5'-triphosphate (484 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Ctp synthase (62 kDa, Protein from Saccharomyces cerevisiae)
- Yeast ctp synthase (ura8) tetramer bound to atp/utp at neutral ph (256 MDa, Complex from Saccharomyces cerevisiae)
Yeast CTP Synthase (URA8) Filament bound to ATP/UTP at low pH
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7rl0
Q-score: 0.312
Hansen JM, Horowitz A, Lynch EM, Farrell DP, Quispe J, DiMaio F, Kollman JM
eLife (2021) 10 [ DOI: doi:10.7554/eLife.73368 Pubmed: 34734801 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Yeast ctp synthase (ura8) filament bound to atp/utp at low ph (256 MDa, Complex from Saccharomyces cerevisiae)
- Ctp synthase (62 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Uridine 5'-triphosphate (484 Da, Ligand)
Yeast CTP Synthase (URA8) Filament bound to CTP at low pH
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7rl5
Q-score: 0.247
Hansen JM, Horowitz A, Lynch EM, Farrell DP, Quispe J, DiMaio F, Kollman JM
eLife (2021) 10 [ Pubmed: 34734801 DOI: doi:10.7554/eLife.73368 ]
- Ctp synthase (62 kDa, Protein from Saccharomyces cerevisiae)
- Yeast ctp synthase filament with ctp bound (256 MDa, Complex from Saccharomyces cerevisiae)
- Cytidine-5'-triphosphate (483 Da, Ligand)