Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8jch
Q-score: 0.403
Zeng Y, Zhang HW, Wu XX, Zhang Y
Nature (2024) 628 pp. 887-893 [ DOI: doi:10.1038/s41586-024-07240-3 Pubmed: 38538796 ]
- 5'-3' exoribonuclease 2 (117 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna-directed rna polymerase ii subunit rpb3 (35 kDa, Protein from Saccharomyces cerevisiae S288C)
- Transcription elongation factor spt5 (115 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (38-mer) (14 kDa, DNA from synthetic construct)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna-directed rna polymerase ii subunit rpb2 (143 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna-directed rna polymerase ii subunit rpb4 (25 kDa, Protein from Saccharomyces cerevisiae S288C)
- Decapping nuclease rai1 (44 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna-directed rna polymerase ii subunit rpb1 (191 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae S288C)
- Zinc ion (65 Da, Ligand)
- Rna polymerase ii pre-termination complex bound with rat1-rai1 and spt5 (Complex from Saccharomyces cerevisiae S288C)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (38-mer) (14 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna-directed rna polymerase ii subunit rpb11 (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- Rna (7 kDa, RNA from synthetic construct)
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Saccharomyces cerevisiae S288C)
Cryo-EM structure of yeast Erf2/Erf4 complex
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8hfc
Q-score: 0.503
Yang A, Liu S, Zhang Y, Chen J, Fan Y, Wang F, Zou Y, Feng S, Wu J, Hu Q
Nat Struct Mol Biol (2024) 31 pp. 436-446 [ Pubmed: 38182928 DOI: doi:10.1038/s41594-023-01183-5 ]
- Palmitic acid (256 Da, Ligand)
- Palmitoyltransferase erf2 (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ras modification protein erf4 (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Erf2/erf4 complex (Complex from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
Rpd3S histone deacetylase complex
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 8kc7
Q-score: 0.375
Dong S, Li H, Wang M, Rasheed N, Zou B, Gao X, Guan J, Li W, Zhang J, Wang C, Zhou N, Shi X, Li M, Zhou M, Huang J, Li H, Zhang Y, Wong KH, Zhang X, Chao WCH, He J
Cell Res (2023) 33 pp. 790-801 [ Pubmed: 37666978 DOI: doi:10.1038/s41422-023-00869-1 ]
- Transcriptional regulatory protein rco1 (84 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Chromatin modification-related protein eaf3 (45 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone deacetylase complex rpd3s in its apo form (527 kDa, Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcriptional regulatory protein sin3 (157 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone deacetylase rpd3 (48 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Cryo-EM structure of the TIM22 complex from yeast
Resolution: 3.83 Å
EM Method: Single-particle
Fitted PDBs: 6lo8
Q-score: 0.41
Zhang Y, Ou X, Wang X, Sun D, Zhou X, Wu X, Li Q, Li L
Cell Res (2021) 31 pp. 366-368 [ Pubmed: 32918038 DOI: doi:10.1038/s41422-020-00399-0 ]
- Mitochondrial import inner membrane translocase subunit tim12 (12 kDa, Protein from Baker's yeast)
- Mitochondrial import inner membrane translocase subunit tim10 (10 kDa, Protein from Baker's yeast)
- Mitochondrial import inner membrane translocase subunit tim54 (54 kDa, Protein from Baker's yeast)
- Mitochondrial import inner membrane translocase subunit tim9 (10 kDa, Protein from Baker's yeast)
- Tim22 complex (Complex from Saccharomyces cerevisiae)
- Mitochondrial import inner membrane translocase subunit tim18 (21 kDa, Protein from Baker's yeast)
- Mitochondrial import inner membrane translocase subunit tim22 (21 kDa, Protein from Baker's yeast)
- Succinate dehydrogenase [ubiquinone] cytochrome b subunit, mitochondrial (22 kDa, Protein from Baker's yeast)
Cryo-EM structure of yeast Ribonuclease P
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 6agb
Q-score: 0.311
Lan P, Tan M, Zhang Y, Niu S, Chen J, Shi S, Qiu S, Wang X, Peng X, Cai G, Cheng H, Wu J, Li G, Lei M
Science (2018) 362 [ DOI: doi:10.1126/science.aat6678 Pubmed: 30262633 ]
- Ribonuclease p protein subunit rpr2 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rnase p (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonucleases p/mrp protein subunit pop3 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Ribonuclease p/mrp protein subunit pop5 (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonucleases p/mrp protein subunit pop8 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rnases mrp/p 32.9 kda subunit (32 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonuclease p rna (118 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonucleases p/mrp protein subunit pop1 (100 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonucleases p/mrp protein subunit pop7 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonucleases p/mrp protein subunit pop6 (18 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonuclease p/mrp protein subunit rpp1 (32 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Cryo-EM structure of yeast Ribonuclease P with pre-tRNA substrate
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 6ah3
Q-score: 0.259
Lan P, Tan M, Zhang Y, Niu S, Chen J, Shi S, Qiu S, Wang X, Peng X, Cai G, Cheng H, Wu J, Li G, Lei M
Science (2018) 362 [ DOI: doi:10.1126/science.aat6678 Pubmed: 30262633 ]
- Ribonuclease p protein subunit rpr2 (16 kDa, Protein from Baker's yeast)
- Rnase p (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonucleases p/mrp protein subunit pop3 (22 kDa, Protein from Baker's yeast)
- Pre-trna (25 kDa, RNA from Saccharomyces cerevisiae S288c)
- Rnases mrp/p 32.9 kda subunit (32 kDa, Protein from Baker's yeast)
- Ribonucleases p/mrp protein subunit pop1 (100 kDa, Protein from Baker's yeast)
- Ribonucleases p/mrp protein subunit pop6 (18 kDa, Protein from Baker's yeast)
- Ribonuclease p rna (118 kDa, RNA from Baker's yeast)
- Rnase p with pre-trna substrate (Complex)
- Ribonuclease p/mrp protein subunit rpp1 (32 kDa, Protein from Baker's yeast)
- Ribonuclease p/mrp protein subunit pop5 (19 kDa, Protein from Baker's yeast)
- Ribonucleases p/mrp protein subunit pop7 (15 kDa, Protein from Baker's yeast)
- Pre-trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribonucleases p/mrp protein subunit pop8 (15 kDa, Protein from Baker's yeast)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)