BamABCDE in MSP1D1 nanodisc ensemble 1-4
Resolution: 8.5 Å
EM Method: Single-particle
Fitted PDBs: 6sob
Q-score: 0.053
To Be Published
- Bam complex (200 kDa, Complex from escherichia coli)
- Outer membrane protein assembly factor bamb (39 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bama (87 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bame (9 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamd (25 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamc (6 kDa, Protein from Escherichia coli)
BamABCDE in MSP1D1 nanodisc ensemble 1-8
Resolution: 10.4 Å
EM Method: Single-particle
Fitted PDBs: 6soj
Q-score: 0.084
To Be Published
- Outer membrane protein assembly factor bamb (39 kDa, Protein from Escherichia coli)
- Bamabcde in msp1d1 nanodisc (Complex from Escherichia coli)
- Outer membrane protein assembly factor bama (87 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bame (9 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamd (25 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamc (6 kDa, Protein from Escherichia coli)
Cryo-EM structure of apo MlaFEDB
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6zy2
Q-score: 0.379
Tang X, Chang S, Qiao W, Luo Q, Chen Y, Jia Z, Coleman J, Zhang K, Wang T, Zhang Z, Zhang C, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 81-91 [ Pubmed: 33199922 DOI: doi:10.1038/s41594-020-00532-y ]
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (Complex from Escherichia coli)
- Toluene tolerance protein ttg2a (29 kDa, Protein from Escherichia coli 909945-2)
- Yrbd protein (Complex from Escherichia coli B185)
- Yrbd protein (19 kDa, Protein from Escherichia coli B185)
- Uncharacterized protein (27 kDa, Protein from Escherichia coli 2.3916)
- Uncharacterized protein (Complex from Escherichia coli 2.3916)
- Mlafedb (Complex)
- Toluene tolerance protein ttg2a (Complex from Escherichia coli 909945-2)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (11 kDa, Protein from Escherichia coli)
Cryo-EM structure of MlaFEDB in complex with phospholipid
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6zy3
Q-score: 0.431
Tang X, Chang S, Qiao W, Luo Q, Chen Y, Jia Z, Coleman J, Zhang K, Wang T, Zhang Z, Zhang C, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 81-91 [ Pubmed: 33199922 DOI: doi:10.1038/s41594-020-00532-y ]
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (Complex from Escherichia coli)
- Toluene tolerance protein ttg2a (29 kDa, Protein from Escherichia coli 909945-2)
- Yrbd protein (Complex from Escherichia coli B185)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Yrbd protein (19 kDa, Protein from Escherichia coli B185)
- Uncharacterized protein (27 kDa, Protein from Escherichia coli 2.3916)
- Uncharacterized protein (Complex from Escherichia coli 2.3916)
- Mlafedb (Complex)
- Toluene tolerance protein ttg2a (Complex from Escherichia coli 909945-2)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (11 kDa, Protein from Escherichia coli)
Cryo-EM structure of MlaFEDB in complex with ADP
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6zy4
Q-score: 0.249
Tang X, Chang S, Qiao W, Luo Q, Chen Y, Jia Z, Coleman J, Zhang K, Wang T, Zhang Z, Zhang C, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 81-91 [ Pubmed: 33199922 DOI: doi:10.1038/s41594-020-00532-y ]
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (Complex from Escherichia coli)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (11 kDa, Protein from Escherichia coli)
- Toluene tolerance protein ttg2a (29 kDa, Protein from Escherichia coli 909945-2)
- Yrbd protein (19 kDa, Protein from Escherichia coli B185)
- Yrbd protein (Complex from Escherichia coli B185)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Uncharacterized protein (Complex from Escherichia coli 2.3916)
- Toluene tolerance protein ttg2a (Complex from Escherichia coli 909945-2)
- Mlafedb (Complex)
- Magnesium ion (24 Da, Ligand)
- Uncharacterized protein (27 kDa, Protein from Escherichia coli 2.3916)
Cryo-EM structure of MlaFEDB in complex with AMP-PNP
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6zy9
Q-score: 0.374
Tang X, Chang S, Qiao W, Luo Q, Chen Y, Jia Z, Coleman J, Zhang K, Wang T, Zhang Z, Zhang C, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 81-91 [ Pubmed: 33199922 DOI: doi:10.1038/s41594-020-00532-y ]
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (Complex from Escherichia coli)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (11 kDa, Protein from Escherichia coli)
- Toluene tolerance protein ttg2a (29 kDa, Protein from Escherichia coli 909945-2)
- Yrbd protein (19 kDa, Protein from Escherichia coli B185)
- Yrbd protein (Complex from Escherichia coli B185)
- Uncharacterized protein (Complex from Escherichia coli 2.3916)
- Toluene tolerance protein ttg2a (Complex from Escherichia coli 909945-2)
- Mlafedb (Complex)
- Magnesium ion (24 Da, Ligand)
- Uncharacterized protein (27 kDa, Protein from Escherichia coli 2.3916)
Structure of a 12 base pair RecA-D loop complex
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7jy7
Q-score: 0.462
Yang H, Zhou C, Dhar A, Pavletich NP
Nature (2020) 586 pp. 801-806 [ DOI: doi:10.1038/s41586-020-2820-9 Pubmed: 33057191 ]
- Dna (48-mer) (14 kDa, DNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Protein reca (35 kDa, Protein from Escherichia coli)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Dna (48-mer) (14 kDa, DNA from Escherichia coli)
- Dna (27-mer) (8 kDa, DNA from Escherichia coli)
- Structure of a 12 base pair reca-d loop complex. (Complex from Escherichia coli)
Structure of a 9 base pair RecA-D loop complex.
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7jy9
Q-score: 0.476
Yang H, Zhou C, Dhar A, Pavletich NP
Nature (2020) 586 pp. 801-806 [ DOI: doi:10.1038/s41586-020-2820-9 Pubmed: 33057191 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Dna (42-mer) (13 kDa, DNA from Escherichia coli)
- Protein reca (35 kDa, Protein from Escherichia coli)
- Dna (42-mer) (13 kDa, DNA from Escherichia coli)
- Dna (27-mer) (8 kDa, DNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Reca-d loop complex (Complex from Escherichia coli)
E. coli 70S-RNAP expressome complex in uncoupled state 1
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6zto
Q-score: 0.546
Webster MW, Takacs M, Zhu C, Vidmar V, Eduljee A, Abdelkareem M, Weixlbaumer A
Science (2020) 369 pp. 1355-1359 [ DOI: doi:10.1126/science.abb5036 Pubmed: 32820062 ]
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (499 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- Trna(fmet) p-site (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (5 kDa, Protein from Escherichia coli)
- Template dna strand (11 kDa, DNA from synthetic construct)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase within the uncoupled e. coli expressome, state 1 (Complex from Escherichia coli)
- Synthetic mrna and template dna (Complex from synthetic construct)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- Phenylalanine (165 Da, Ligand)
- Mrna (17 kDa, RNA from synthetic construct)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- Uncoupled e. coli expressome, state 1 (Complex)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 70s ribosome within the uncoupled e. coli expressome, state 1 (Complex from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- Non-template dna strand (12 kDa, DNA from synthetic construct)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (17 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- Phe-nh-trna(phe) a-site (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6ztj
Q-score: 0.415
Webster MW, Takacs M, Zhu C, Vidmar V, Eduljee A, Abdelkareem M, Weixlbaumer A
Science (2020) 369 pp. 1355-1359 [ DOI: doi:10.1126/science.abb5036 Pubmed: 32820062 ]
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (499 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- Trna(fmet) p-site (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (5 kDa, Protein from Escherichia coli)
- Template dna strand (11 kDa, DNA from synthetic construct)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Synthetic mrna and template dna (Complex from synthetic construct)
- Dna-directed rna polymerase within the nusg-coupled expressome (Complex from Escherichia coli)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- Transcription termination/antitermination protein nusg (20 kDa, Protein from Escherichia coli)
- Phenylalanine (165 Da, Ligand)
- Mrna (17 kDa, RNA from synthetic construct)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 70s ribosome within the nusg-coupled expressome (Complex from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s1 (61 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- Non-template dna strand (12 kDa, DNA from synthetic construct)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (17 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- Phe-nh-trna(phe) a-site (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- E. coli 70s-rnap expressome complex in nusg-coupled state (Complex)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)