Cryo-EM structure of MlaFEDB in complex with ADP
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6zy4
Q-score: 0.249
Tang X, Chang S, Qiao W, Luo Q, Chen Y, Jia Z, Coleman J, Zhang K, Wang T, Zhang Z, Zhang C, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 81-91 [ Pubmed: 33199922 DOI: doi:10.1038/s41594-020-00532-y ]
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (Complex from Escherichia coli)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (11 kDa, Protein from Escherichia coli)
- Toluene tolerance protein ttg2a (29 kDa, Protein from Escherichia coli 909945-2)
- Yrbd protein (19 kDa, Protein from Escherichia coli B185)
- Yrbd protein (Complex from Escherichia coli B185)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Uncharacterized protein (Complex from Escherichia coli 2.3916)
- Toluene tolerance protein ttg2a (Complex from Escherichia coli 909945-2)
- Mlafedb (Complex)
- Magnesium ion (24 Da, Ligand)
- Uncharacterized protein (27 kDa, Protein from Escherichia coli 2.3916)
Satellite phage P4 procapsid including size determination (Sid) protein
Resolution: 4.19 Å
EM Method: Single-particle
Fitted PDBs: 7jw1
Q-score: 0.445
Kizziah JL, Rodenburg CM, Dokland T
Viruses (2020) 12 [ DOI: doi:10.3390/v12090953 Pubmed: 32867300 ]
- Size determination protein sid (27 kDa, Protein from Enterobacteria phage P4)
- Major capsid protein gpn (40 kDa, Protein from Escherichia phage P2)
- P4 procapsid (Complex from Escherichia coli)
Cryo-EM structure of nucleotide-free MsbA reconstituted into peptidiscs, conformation 1
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6uz2
Q-score: 0.342
Angiulli G, Dhupar HS, Suzuki H, Wason IS, Duong Van Hoa F, Walz T
eLife (2020) 9 [ DOI: doi:10.7554/eLife.53530 Pubmed: 32125274 ]
Cryo-EM structure of nucleotide-free MsbA reconstituted into peptidiscs, conformation 2
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6uzl
Q-score: 0.281
Angiulli G, Dhupar HS, Suzuki H, Wason IS, Duong Van Hoa F, Walz T
eLife (2020) 9 [ DOI: doi:10.7554/eLife.53530 Pubmed: 32125274 ]
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6sw9
Q-score: 0.337
Coureux PD, Lazennec-Schurdevin C, Bourcier S, Mechulam Y, Schmitt E
Commun Biol (2020) 3 pp. 58-58 [ DOI: doi:10.1038/s42003-020-0780-0 Pubmed: 32029867 ]
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 2 subunit alpha (28 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Methionine (149 Da, Ligand)
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Ribosome (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Mrna (6 kDa, RNA from Pyrococcus abyssi GE5)
- Initiator met-trna fmet from e. coli (a1u72 variant) (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 2 subunit beta (14 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Trna (Complex from Escherichia coli)
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Zinc ion (65 Da, Ligand)
- Mrna (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 1a (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Water (18 Da, Ligand)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Magnesium ion (24 Da, Ligand)
- Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 2 subunit gamma (45 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
- 50s ribosomal protein l41e (4 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Archaeal translation initiation complex devoid of aif1 - ic2a state (1 MDa, Complex)
- Translation initiation factor 1a (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 16s ribosomal rna (487 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 2 subunits alpha, beta and gamma (Complex from Saccharolobus solfataricus P2)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6pwp
Q-score: 0.299
Cryo-EM structure of the RecBCD Chi partially-recognised complex
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6sje
Q-score: 0.315
Cheng K, Wilkinson M, Chaban Y, Wigley DB
Nat Struct Mol Biol (2020) 27 pp. 71-77 [ DOI: doi:10.1038/s41594-019-0355-2 Pubmed: 31907455 ]
- Recbcd enzyme subunit recb (134 kDa, Protein from Escherichia coli)
- Dna fork substrate (26 kDa, DNA from synthetic construct)
- Recbcd bound to a forked chi-containing dna substrate (355 kDa, Complex)
- Recbcd enzyme subunit recc (128 kDa, Protein from Escherichia coli)
- Recbcd enzyme subunit recd (66 kDa, Protein from Escherichia coli)
- Forked chi-containing dna substrate (Complex from synthetic construct)
- Recbcd (Complex from Escherichia coli)