The structure of MutS bound to two molecules of AMPPNP
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7oto
Q-score: 0.499
Borsellini A, Kunetsky V, Friedhoff P, Lamers MH
Nat Struct Mol Biol (2022) 29 pp. 59-66 [ Pubmed: 35013597 DOI: doi:10.1038/s41594-021-00707-1 ]
- Dna mismatch repair protein muts (190 kDa, Cellular component from Escherichia coli)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dna mismatch repair protein muts (90 kDa, Protein from Escherichia coli (strain K12))
- Magnesium ion (24 Da, Ligand)
The structure of MutS bound to two molecules of ADP-Vanadate
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7ou0
Q-score: 0.413
Borsellini A, Kunetsky V, Friedhoff P, Lamers MH
Nat Struct Mol Biol (2022) 29 pp. 59-66 [ Pubmed: 35013597 DOI: doi:10.1038/s41594-021-00707-1 ]
- Magnesium ion (24 Da, Ligand)
- Dna mismatch repair protein muts (90 kDa, Protein from Escherichia coli (strain K12))
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Dna mismatch repair protein muts (190 kDa, Cellular component from Escherichia coli)
- Vanadate ion (114 Da, Ligand)
The structure of MutS bound to two molecules of ADP
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7ou2
Q-score: 0.18
Borsellini A, Kunetsky V, Friedhoff P, Lamers MH
Nat Struct Mol Biol (2022) 29 pp. 59-66 [ Pubmed: 35013597 DOI: doi:10.1038/s41594-021-00707-1 ]
- Dna mismatch repair protein muts (190 kDa, Cellular component from Escherichia coli)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Dna mismatch repair protein muts (96 kDa, Protein from Escherichia coli)
The structure of MutS bound to one molecule of ATP and one molecule of ADP
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ou4
Q-score: 0.446
Borsellini A, Kunetsky V, Friedhoff P, Lamers MH
Nat Struct Mol Biol (2022) 29 pp. 59-66 [ Pubmed: 35013597 DOI: doi:10.1038/s41594-021-00707-1 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Dna mismatch repair protein muts (90 kDa, Protein from Escherichia coli)
- Dna mismatch repair protein muts (190 kDa, Cellular component from Escherichia coli)
Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7nsp
Q-score: 0.448
Beckert B, Leroy EC, Sothiselvam S, Bock LV, Svetlov MS, Graf M, Arenz S, Abdelshahid M, Seip B, Grubmuller H, Mankin AS, Innis CA, Vazquez-Laslop N, Wilson DN
Nat Commun (2021) 12 pp. 4466-4466 [ DOI: doi:10.1038/s41467-021-24674-9 Pubmed: 34294725 ]
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- P-trna (leu) (28 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- Ermdl (877 Da, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 16s rrna (499 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
- A-trna (arg) (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- Erythromycin a (733 Da, Ligand)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
- Structure of ermdl-erythromycin-stalled 70s e. coli ribosomal complex with a and p-trna (Complex from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- Mrna (1 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7nso
Q-score: 0.551
Beckert B, Leroy EC, Sothiselvam S, Bock LV, Svetlov MS, Graf M, Arenz S, Abdelshahid M, Seip B, Grubmuller H, Mankin AS, Innis CA, Vazquez-Laslop N, Wilson DN
Nat Commun (2021) 12 pp. 4466-4466 [ DOI: doi:10.1038/s41467-021-24674-9 Pubmed: 34294725 ]
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- Structure of ermdl-erythromycin-stalled 70s e. coli ribosomal complex with p-trna (Complex from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- Ermdl (877 Da, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- Ptrna-leu (28 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 16s rrna (1540-mer) (499 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- Erythromycin a (733 Da, Ligand)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 23s rrna (2903-mer) (941 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
- Mrna (872 Da, RNA from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
Spiral structure of E. coli RavA in the RavA-LdcI cage-like complex
Resolution: 7.6 Å
EM Method: Single-particle
Fitted PDBs: 6q7l
Q-score: 0.093
Jessop M, Arragain B, Miras R, Fraudeau A, Huard K, Bacia-Verloop M, Catty P, Felix J, Malet H, Gutsche I
Commun Biol (2020) 3 pp. 46-46 [ Pubmed: 31992852 DOI: doi:10.1038/s42003-020-0772-0 ]
- Pyridoxal-5'-phosphate (247 Da, Ligand)
- Inducible lysine decarboxylase (81 kDa, Protein from Escherichia coli)
- Atpase rava (56 kDa, Protein from Escherichia coli)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Complex of the hexameric moxr aaa+ atpase rava and the decameric lysine decarboxylase ldci. (3 MDa, Complex from Escherichia coli)
- Atpase rava (56 kDa, Protein from Escherichia coli)
Spiral structure of E. coli RavA in the RavA-LdcI cage-like complex
Resolution: 7.8 Å
EM Method: Single-particle
Fitted PDBs: 6q7m
Q-score: 0.088
Jessop M, Arragain B, Miras R, Fraudeau A, Huard K, Bacia-Verloop M, Catty P, Felix J, Malet H, Gutsche I
Commun Biol (2020) 3 pp. 46-46 [ Pubmed: 31992852 DOI: doi:10.1038/s42003-020-0772-0 ]
- Pyridoxal-5'-phosphate (247 Da, Ligand)
- Inducible lysine decarboxylase (81 kDa, Protein from Escherichia coli)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Complex of the hexameric moxr aaa+ atpase rava and the decameric lysine decarboxylase ldci. (3 MDa, Complex from Escherichia coli)
- Atpase rava (56 kDa, Protein from Escherichia coli)
Cryo-EM structure of the adenosine A2A receptor bound to a miniGs heterotrimer
Resolution: 4.11 Å
EM Method: Single-particle
Fitted PDBs: 6gdg
Q-score: 0.364
Garcia-Nafria J, Lee Y, Bai X, Carpenter B, Tate CG
eLife (2018) 7 [ Pubmed: 29726815 DOI: doi:10.7554/eLife.35946 ]
- Nanobody nb35 (16 kDa, Protein from Lama glama)
- Trxa,adenosine receptor a2a (52 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(s) subunit alpha isoforms short,guanine nucleotide-binding protein g(s) subunit alpha isoforms short (28 kDa, Protein from Homo sapiens)
- Nanobody nb35 (Complex from Lama glama)
- Adenosine receptor a2a (Complex from Escherichia coli)
- Adenosine a2a receptor bound to minigs heterotrimer (137 kDa, Complex)
- Minigs heterotrimer (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- N-ethyl-5'-carboxamido adenosine (308 Da, Ligand)