Cryo-EM structure of the RecA postsynaptic filament from S. pneumoniae
Resolution: 3.8 Å
EM Method: Helical reconstruction
Fitted PDBs: 8amf
Q-score: 0.409
Hertzog M, Perry TN, Dupaigne P, Serres S, Morales V, Soulet AL, Bell JC, Margeat E, Kowalczykowski SC, Le Cam E, Fronzes R, Polard P
Nucleic Acids Res (2023) 51 pp. 2800-2817 [ Pubmed: 36806960 DOI: doi:10.1093/nar/gkad080 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Dna (3 kDa, DNA from Lambdavirus lambda)
- Reca postsynaptic complex from s. pneumoniae (Complex from Streptococcus pneumoniae)
- Dna (2 kDa, DNA from Lambdavirus lambda)
- Protein reca (42 kDa, Protein from Streptococcus pneumoniae)
Structure of bacteriophage lambda tube protein V in C3
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7t4f
Q-score: 0.547
Prokhorov NS, Yang Q, Catalano CE, Morais MC
To Be Published
- Escherichia virus lambda (Virus from Escherichia virus Lambda)
- Tail tube protein (25 kDa, Protein from Escherichia virus Lambda)
Structure of bacteriophage lambda tube protein V in C6
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7t2e
Q-score: 0.631
Prokhorov NS, Yang Q, Catalano CE, Morais MC
To Be Published
- Tail tube protein (16 kDa, Protein from Escherichia virus Lambda)
- Escherichia virus lambda (Virus from Escherichia virus Lambda)
Bacteriophage Lambda Red-Beta N-terminal domain helical assembly in complex with dsDNA
Resolution: 3.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 7ujl
Q-score: 0.543
Newing TP, Brewster JL, Fitschen LJ, Bouwer JC, Johnston NP, Yu H, Tolun G
Nat Commun (2022) 13 pp. 5649- [ Pubmed: 36163171 DOI: doi:10.1038/s41467-022-33090-6 ]
- Complementary ssdna (Complex from Escherichia coli)
- Template ssdna (Complex from Escherichia coli)
- Complementary dna (8 kDa, DNA from Escherichia coli)
- Red-beta annealase n-terminal domain (Complex from Escherichia virus Lambda)
- Template dna (8 kDa, DNA from Escherichia coli)
- Recombination protein bet (21 kDa, Protein from Escherichia virus Lambda)
- Redbeta177 oligomeric helical assembly bound to two complementary 27mer ssdna oligonucleotides (102 MDa, Complex)
Cryo-EM structure of bacteriophage lambda procapsid at 5.03 Angstrom
Resolution: 5.03 Å
EM Method: Single-particle
Fitted PDBs: 7vi9
Q-score: 0.268
Structure (2022) 30 pp. 637- [ DOI: doi:10.1016/j.str.2021.12.009 Pubmed: 35026161 ]
- Major capsid protein (38 kDa, Protein from Escherichia phage lambda)
- Escherichia virus lambda (Virus from Escherichia virus Lambda)
Focused refinement of asymmetric unit of bacteriophage lambda procapsid at 3.88 Angstrom
Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 7via
Q-score: 0.444
Structure (2022) 30 pp. 637- [ Pubmed: 35026161 DOI: doi:10.1016/j.str.2021.12.009 ]
- Escherichia virus lambda (Virus from Escherichia virus Lambda)
- Major capsid protein (38 kDa, Protein from Escherichia phage lambda)
cryoEM structure of bacteriophage lambda capsid at 5.6 Angstrom
Resolution: 5.6 Å
EM Method: Single-particle
Fitted PDBs: 7vii
Q-score: 0.209
Structure (2022) 30 pp. 637- [ DOI: doi:10.1016/j.str.2021.12.009 Pubmed: 35026161 ]
- Major capsid protein (38 kDa, Protein from Escherichia phage lambda)
- Escherichia virus lambda (Virus from Escherichia virus Lambda)
- Capsid decoration protein (11 kDa, Protein from Escherichia phage lambda)
Asymmetric unit of cryoEM structure of bacteriophage lambda capsid at 3.76 Angstrom
Resolution: 3.76 Å
EM Method: Single-particle
Fitted PDBs: 7vik
Q-score: 0.447
Structure (2022) 30 pp. 637- [ Pubmed: 35026161 DOI: doi:10.1016/j.str.2021.12.009 ]
- Escherichia virus lambda (Virus from Escherichia virus Lambda)
- Capsid decoration protein (11 kDa, Protein from Escherichia phage lambda)
- Major capsid protein (38 kDa, Protein from Escherichia phage lambda)
Cryo-EM structure of Escherichia coli RNA polymerase bound to lambda PR promoter DNA (class 1)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7mkd
Q-score: 0.495
Saecker RM, Chen J, Chiu CE, Malone B, Sotiris J, Ebrahim M, Yen LY, Eng ET, Darst SA
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2112877118 Pubmed: 34599106 ]
- Escherichia coli sigma 70 rna polymerase bound to lambda pr promoter dna (Complex)
- Rna polymerase sigma factor rpod (70 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Template strand of lambda pr promoter dna (27 kDa, DNA from Escherichia virus Lambda)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Chapso (631 Da, Ligand)
- Lambda pr promoter dna (Complex from Escherichia virus Lambda)
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli)
- Rna polymerase (Complex from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Nontemplate strand of lambda pr promoter dna (27 kDa, DNA from Escherichia virus Lambda)
Cryo-EM structure of Escherichia coli RNA polymerase bound to lambda PR promoter DNA (class 2)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7mke
Q-score: 0.412
Saecker RM, Chen J, Chiu CE, Malone B, Sotiris J, Ebrahim M, Yen LY, Eng ET, Darst SA
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2112877118 Pubmed: 34599106 ]
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Lambda pr promoter dna (class 2) (Complex from Escherichia virus Lambda)
- Rna polymerase (Complex from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Rna polymerase sigma factor rpod (70 kDa, Protein from Escherichia coli)
- Chapso (631 Da, Ligand)
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli)
- Template strand of lambda pr dna promoter (27 kDa, DNA from Escherichia virus Lambda)
- Magnesium ion (24 Da, Ligand)
- Escherichia coli rna polymerase bound to lambda pr promoter dna (Complex)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Nontemplate strand of lambda pr dna promoter (27 kDa, DNA from Escherichia virus Lambda)