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Banach BB, Cerutti G, Fahad AS, Shen CH, Oliveira De Souza M, Katsamba PS, Tsybovsky Y, Wang P, Nair MS, Huang Y, Francino-Urdániz IM, Steiner PJ, Gutiérrez-González M, Liu L, López Acevedo SN, Nazzari AF, Wolfe JR, Luo Y, Olia AS, Teng IT, Yu J, Zhou T, Reddem ER, Bimela J, Pan X, Madan B, Laflin AD, Nimrania R, Yuen KY, Whitehead TA, Ho DD, Kwong PD, Shapiro L, DeKosky BJ
Cell Rep (2021) 37 [ Pubmed: 34587480 DOI: 10.1016/j.celrep.2021.109771 ]
Image sets:
Nucleocapsid protein Sars-Cov2
To Be Published
SARS-CoV-2 Spike RBD in complex with Mab-23 (Fab)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8p5m
Q-score: 0.554
To Be Published
- Monoclonal antibody mab-23 (Complex from Enterobacteria phage T4)
- Mab-23 (light chain variable domain) (23 kDa, Protein from Homo sapiens)
- Spike rbd (two molecules) in complex with two fu2 nanobodies (95 kDa, Complex)
- Sars-cov-2 spike (rbd) (Complex from Severe acute respiratory syndrome coronavirus 2)
- Mab-23 (heavy chain variable domain) (48 kDa, Protein from Homo sapiens)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
S protein of SARS-CoV-2 in complex with 3711
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8hlc
Q-score: 0.431
To Be Published
- S protein of sars-cov-2 in complex with 3711 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of 3711 (28 kDa, Protein from Homo sapiens)
- Light chain of 3711 (27 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Linoleic acid (280 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
S protein of SARS-CoV-2 in complex with 26434
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8hld
Q-score: 0.324
To Be Published
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Heavy chain of 26434 (28 kDa, Protein from Homo sapiens)
- Light chain of 26434 (23 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 in complex with 26434 (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Delta Spike in complex with JL-8C
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 8yro
Q-score: 0.283
Chen X, Mohapatra A, Nguyen HTV, Schimanski L, Tan TK, Rijal P, Chen CP, Cheng SH, Lee WH, Chou YC, Townsend AR, Ma C, Huang KA
PLoS Pathog (2024) [ DOI: doi:10.1371/journal.ppat.1012246 ]
- Sars-cov-2 delta spike in complex with jl-8c (550 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Jl-8c light chain (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Jl-8c heavy chain (13 kDa, Protein from Homo sapiens)
SARS-CoV-2 Delta Spike in complex with JM-1A
Resolution: 3.64 Å
EM Method: Single-particle
Fitted PDBs: 8yrp
Q-score: 0.25
Chen X, Mohapatra A, Nguyen HTV, Schimanski L, Tan TK, Rijal P, Chen CP, Cheng SH, Lee WH, Chou YC, Townsend AR, Ma C, Huang KA
PLoS Pathog (2024) [ DOI: doi:10.1371/journal.ppat.1012246 ]
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Jm-1a light chain (11 kDa, Protein from Homo sapiens)
- Jm-1a heavy chain (12 kDa, Protein from Homo sapiens)
- Sars-cov-2 delta spike in complex with jm-1a (550 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Delta Spike in complex with Fab of JE-5C
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 8yz5
Q-score: 0.234
Chen X, Mohapatra A, Nguyen HTV, Schimanski L, Tan TK, Rijal P, Chen CP, Cheng SH, Lee WH, Chou YC, Townsend AR, Ma C, Huang KA
PLoS Pathog (2024) [ DOI: doi:10.1371/journal.ppat.1012246 ]
- Fab light chain of je-5c (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 delta spike in complex with fab of je-5c (Complex from Severe acute respiratory syndrome coronavirus 2)
- Fab heavy chain of je-5c (12 kDa, Protein from Homo sapiens)
SARS-CoV-2 Spike (BA.1) in complex with Fab of JH-8B
Resolution: 4.55 Å
EM Method: Single-particle
Fitted PDBs: 8yz6
Q-score: 0.21
Chen X, Mohapatra A, Nguyen HTV, Schimanski L, Tan TK, Rijal P, Chen CP, Cheng SH, Lee WH, Chou YC, Townsend AR, Ma C, Huang KA
PLoS Pathog (2024) [ DOI: doi:10.1371/journal.ppat.1012246 ]
- Fab light chain of jh-8b (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 delta spike in complex with fab of je-5c (Complex from Severe acute respiratory syndrome coronavirus 2)
- Fab heavy chain of jh-8b (12 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Structure of SARS-CoV-2 (HP-GSAS-Mut7) spike in complex with TXG-0078 Fab -Conformation 1
Hurtado J, Rogers TF, Jaffe DB, Adams BA, Bangaru S, Garcia E, Capozzola T, Messmer T, Sharma P, Song G, Beutler N, He W, Dueker K, Musharrafieh R, Stubbington MJT, Burton DR, Andrabi R, Ward AB, McDonnell WJ, Briney B
To Be Published