Cryo-EM structure of abscisic acid transporter AtABCG25 with ABA
Cryo-EM structure of abscisic acid transporter AtABCG25 in outward conformation
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8i3a
Q-score: 0.579
Huang X, Zhang X, An N, Zhang M, Ma M, Yang Y, Jing L, Wang Y, Chen Z, Zhang P
Nat Plants (2023) 9 pp. 1709-1719 [ Pubmed: 37666961 DOI: doi:10.1038/s41477-023-01509-7 ]
- Magnesium ion (24 Da, Ligand)
- Abc transporter g family member 25 (72 kDa, Protein from Arabidopsis thaliana)
- Arabidopsis thaliana abcg25 (Complex from Arabidopsis thaliana)
- Adenosine-5'-triphosphate (507 Da, Ligand)
Cryo-EM structure of abscisic acid transporter AtABCG25 in nanodisc
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 8i3b
Q-score: 0.509
Huang X, Zhang X, An N, Zhang M, Ma M, Yang Y, Jing L, Wang Y, Chen Z, Zhang P
Nat Plants (2023) 9 pp. 1709-1719 [ Pubmed: 37666961 DOI: doi:10.1038/s41477-023-01509-7 ]
- Abc transporter g family member 25 (72 kDa, Protein from Arabidopsis thaliana)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Arabidopsis thaliana abcg25 (Complex from Arabidopsis thaliana)
Cryo-EM structure of abscisic acid transporter AtABCG25 with CHS
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 8i3c
Q-score: 0.572
Huang X, Zhang X, An N, Zhang M, Ma M, Yang Y, Jing L, Wang Y, Chen Z, Zhang P
Nat Plants (2023) 9 pp. 1709-1719 [ Pubmed: 37666961 DOI: doi:10.1038/s41477-023-01509-7 ]
- Cholesterol hemisuccinate (486 Da, Ligand)
- Abc transporter g family member 25 (72 kDa, Protein from Arabidopsis thaliana)
- Arabidopsis thaliana abcg25 (Complex from Arabidopsis thaliana)
The Arabidopsis CLCa transporter bound with chloride, ATP and PIP2
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 8iab
Q-score: 0.617
Yang Z, Zhang X, Ye S, Zheng J, Huang X, Yu F, Chen Z, Cai S, Zhang P
Nat Commun (2023) 14 pp. 4879-4879 [ Pubmed: 37573431 DOI: doi:10.1038/s41467-023-40624-z ]
- Chloride ion (35 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Chloride channel protein clc-a (85 kDa, Protein from Arabidopsis thaliana)
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
- The arabidopsis clca transporter (Complex from Arabidopsis thaliana)
- Magnesium ion (24 Da, Ligand)
The Arabidopsis CLCa transporter bound with nitrate, ATP and PIP2
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 8iad
Q-score: 0.532
Yang Z, Zhang X, Ye S, Zheng J, Huang X, Yu F, Chen Z, Cai S, Zhang P
Nat Commun (2023) 14 pp. 4879-4879 [ Pubmed: 37573431 DOI: doi:10.1038/s41467-023-40624-z ]
- Nitrate ion (62 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- The arabidopsis clca transporter (Complex from Arabidopsis thaliana)
- Magnesium ion (24 Da, Ligand)
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
- Chloride channel protein clc-a (85 kDa, Protein from Arabidopsis thaliana)
Cryo-EM Structure of Arabidopsis CRY2 tetramer in complex with CIB1 fragment
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 7x0y
Q-score: 0.418
Hao Y, Zhang X, Liu Y, Ma M, Huang X, Liu H, Zhang P
Plant Commun. (2023) 4 pp. 100475-100475 [ Pubmed: 36371635 DOI: doi:10.1016/j.xplc.2022.100475 ]
- Cib1 fragment (698 Da, Protein from Arabidopsis thaliana)
- Cryptochrome-2 (69 kDa, Protein from Arabidopsis thaliana)
- Arabidosis cry2 tetramer in complex with cib1 fragment (Complex from Arabidopsis)
- Flavin-adenine dinucleotide (785 Da, Ligand)
Left PSI in the cyclic electron transport supercomplex NDH-PSI from Arabidopsis
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7wfd
Q-score: 0.526
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from thale cress)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from thale cress)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from thale cress)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from thale cress)
- Photosystem i reaction center subunit ix (5 kDa, Protein from thale cress)
- Cylic electron transfer supercomplex from arabidopsis (Complex from Arabidopsis thaliana)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from thale cress)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from thale cress)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from thale cress)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from thale cress)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 6, chloroplastic (29 kDa, Protein from thale cress)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from thale cress)
- Photosystem i reaction center subunit viii (4 kDa, Protein from thale cress)
- Photosystem i iron-sulfur center (9 kDa, Protein from thale cress)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from thale cress)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from thale cress)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from thale cress)
Right PSI in the cyclic electron transfer supercomplex NDH-PSI from Arabidopsis
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7wfe
Q-score: 0.508
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Psi complex in the ndh-psi supercomplex of arabidopsis (Complex from Arabidopsis thaliana)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from thale cress)
- Photosystem i chlorophyll a/b-binding protein 5, chloroplastic (27 kDa, Protein from thale cress)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from thale cress)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from thale cress)
- Photosystem i reaction center subunit ix (5 kDa, Protein from thale cress)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from thale cress)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from thale cress)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from thale cress)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from thale cress)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from thale cress)
- Photosystem i reaction center subunit viii (4 kDa, Protein from thale cress)
- Photosystem i iron-sulfur center (9 kDa, Protein from thale cress)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from thale cress)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from thale cress)
- Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from thale cress)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from thale cress)
Subcomplexes B,M and L in the Cylic electron transfer supercomplex NDH-PSI from Arabidopsis
Resolution: 3.59 Å
EM Method: Single-particle
Fitted PDBs: 7wff
Q-score: 0.442
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of lumenal location 2, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (40 kDa, Protein from Arabidopsis thaliana)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosynthetic ndh subunit of lumenal location 3, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of subcomplex b 3, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
- Ndh dependent flow 6 (18 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of lumenal location 4, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of lumenal location 1, chloroplastic (26 kDa, Protein from Arabidopsis thaliana)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (57 kDa, Protein from Arabidopsis thaliana)
- Isoform 2 of photosynthetic ndh subunit of lumenal location 5, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of subcomplex b 1, chloroplastic (51 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit 5, chloroplastic (85 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of subcomplex b 2, chloroplastic (38 kDa, Protein from Arabidopsis thaliana)
- Cylic electron transfer supercomplex from arabidopsis (Complex from Arabidopsis thaliana)
- Photosynthetic ndh subunit of subcomplex b 5, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)