Coordinates of Cryo-EM structure of the Arabidopsis thaliana PSI in state 1 (PSI-ST1)
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8j7a
Q-score: 0.549
Wu J, Chen S, Wang C, Lin W, Huang C, Fan C, Han D, Lu D, Xu X, Sui S, Zhang L
Mol Plant (2023) 16 pp. 1937-1950 [ DOI: doi:10.1016/j.molp.2023.11.002 Pubmed: 37936349 ]
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from Arabidopsis thaliana)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a isomer (893 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from Arabidopsis thaliana)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from Arabidopsis thaliana)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Cryo-em structure of the arabidopsis thaliana photosystem i(psi-lhcii-st2) (Complex from Arabidopsis thaliana)
- Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Photosystem i iron-sulfur center (9 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Arabidopsis thaliana)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from Arabidopsis thaliana)
Coordinates of Cryo-EM structure of the Arabidopsis thaliana PSI in state 2 (PSI-ST2)
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 8j7b
Q-score: 0.576
Wu J, Chen S, Wang C, Lin W, Huang C, Fan C, Han D, Lu D, Xu X, Sui S, Zhang L
Mol Plant (2023) 16 pp. 1937-1950 [ DOI: doi:10.1016/j.molp.2023.11.002 Pubmed: 37936349 ]
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from Arabidopsis thaliana)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a isomer (893 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from Arabidopsis thaliana)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from Arabidopsis thaliana)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Cryo-em structure of the arabidopsis thaliana photosystem i(psi-lhcii-st2) (Complex from Arabidopsis thaliana)
- Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Photosystem i iron-sulfur center (9 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Arabidopsis thaliana)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from Arabidopsis thaliana)
Left PSI in the cyclic electron transport supercomplex NDH-PSI from Arabidopsis
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7wfd
Q-score: 0.526
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from thale cress)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from thale cress)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from thale cress)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from thale cress)
- Photosystem i reaction center subunit ix (5 kDa, Protein from thale cress)
- Cylic electron transfer supercomplex from arabidopsis (Complex from Arabidopsis thaliana)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from thale cress)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from thale cress)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from thale cress)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from thale cress)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 6, chloroplastic (29 kDa, Protein from thale cress)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from thale cress)
- Photosystem i reaction center subunit viii (4 kDa, Protein from thale cress)
- Photosystem i iron-sulfur center (9 kDa, Protein from thale cress)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from thale cress)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from thale cress)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from thale cress)
Right PSI in the cyclic electron transfer supercomplex NDH-PSI from Arabidopsis
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7wfe
Q-score: 0.508
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Psi complex in the ndh-psi supercomplex of arabidopsis (Complex from Arabidopsis thaliana)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from thale cress)
- Photosystem i chlorophyll a/b-binding protein 5, chloroplastic (27 kDa, Protein from thale cress)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from thale cress)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from thale cress)
- Photosystem i reaction center subunit ix (5 kDa, Protein from thale cress)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from thale cress)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from thale cress)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from thale cress)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from thale cress)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from thale cress)
- Photosystem i reaction center subunit viii (4 kDa, Protein from thale cress)
- Photosystem i iron-sulfur center (9 kDa, Protein from thale cress)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from thale cress)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from thale cress)
- Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from thale cress)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from thale cress)
Subcomplexes B,M and L in the Cylic electron transfer supercomplex NDH-PSI from Arabidopsis
Resolution: 3.59 Å
EM Method: Single-particle
Fitted PDBs: 7wff
Q-score: 0.442
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of lumenal location 2, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (40 kDa, Protein from Arabidopsis thaliana)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosynthetic ndh subunit of lumenal location 3, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of subcomplex b 3, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
- Ndh dependent flow 6 (18 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of lumenal location 4, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of lumenal location 1, chloroplastic (26 kDa, Protein from Arabidopsis thaliana)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (57 kDa, Protein from Arabidopsis thaliana)
- Isoform 2 of photosynthetic ndh subunit of lumenal location 5, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of subcomplex b 1, chloroplastic (51 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit 5, chloroplastic (85 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of subcomplex b 2, chloroplastic (38 kDa, Protein from Arabidopsis thaliana)
- Cylic electron transfer supercomplex from arabidopsis (Complex from Arabidopsis thaliana)
- Photosynthetic ndh subunit of subcomplex b 5, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
Cyclic electron transport supercomplex NDH-PSI from Arabidopsis
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 7wg5
Q-score: 0.278
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ Pubmed: 35123031 DOI: doi:10.1016/j.molp.2022.01.020 ]
- Nad(p)h-quinone oxidoreductase subunit j, chloroplastic (18 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of subcomplex b 2, chloroplastic (38 kDa, Protein from thale cress)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit l, chloroplastic (21 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (57 kDa, Protein from thale cress)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex b 1, chloroplastic (51 kDa, Protein from thale cress)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from thale cress)
- Beta-carotene (536 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosynthetic ndh subunit of lumenal location 3, chloroplastic (24 kDa, Protein from thale cress)
- Ndho (17 kDa, Protein from thale cress)
- Isoform 2 of photosynthetic ndh subunit of lumenal location 5, chloroplastic (27 kDa, Protein from thale cress)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from thale cress)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 6, chloroplastic (29 kDa, Protein from thale cress)
- Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of subcomplex b 5, chloroplastic (23 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from thale cress)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from thale cress)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of lumenal location 2, chloroplastic (22 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (40 kDa, Protein from thale cress)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of lumenal location 4, chloroplastic (23 kDa, Protein from thale cress)
- Ndht (10 kDa, Protein from thale cress)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (25 kDa, Protein from thale cress)
- Iron/sulfur cluster (351 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (45 kDa, Protein from thale cress)
- Photosynthetic ndh subunit of lumenal location 1, chloroplastic (26 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit n, chloroplastic (23 kDa, Protein from thale cress)
- Photosystem i reaction center subunit ix (5 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from thale cress)
- Chlorophyll b (907 Da, Ligand)
- Ndh dependent flow 6 (18 kDa, Protein from thale cress)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i iron-sulfur center (9 kDa, Protein from thale cress)
- Cyclic electron transfer supercomplex from arabidopsis (Complex from Arabidopsis thaliana)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 5, chloroplastic (85 kDa, Protein from thale cress)
- Photosystem i reaction center subunit viii (4 kDa, Protein from thale cress)
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from thale cress)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from thale cress)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from thale cress)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from thale cress)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex b 3, chloroplastic (22 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit m, chloroplastic (24 kDa, Protein from thale cress)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 5, chloroplastic (27 kDa, Protein from thale cress)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from thale cress)
- Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (20 kDa, Protein from thale cress)