E. coli cytochrome bo3 ubiquinol oxidase monomer
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 8f68
Q-score: 0.506
Guo Y, Karimullina E, Emde T, Otwinowski Z, Borek D, Savchenko A
Protein Sci (2023) 32 pp. e4616-e4616 [ Pubmed: 36880269 DOI: doi:10.1002/pro.4616 ]
- E. coli cytochrome bo3 ubiquinol oxidase monomer (Complex from Escherichia coli)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 1 (73 kDa, Protein from Escherichia coli)
- Cytochrome bo(3) ubiquinol oxidase subunit 3 (20 kDa, Protein from Escherichia coli)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Heme o (838 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 4 (10 kDa, Protein from Escherichia coli)
- Cytochrome bo(3) ubiquinol oxidase subunit 2 (28 kDa, Protein from Escherichia coli)
E. coli cytochrome bo3 ubiquinol oxidase dimer
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 8f6c
Q-score: 0.429
Guo Y, Karimullina E, Emde T, Otwinowski Z, Borek D, Savchenko A
Protein Sci (2023) 32 pp. e4616-e4616 [ Pubmed: 36880269 DOI: doi:10.1002/pro.4616 ]
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 1 (73 kDa, Protein from Escherichia coli)
- Cytochrome bo(3) ubiquinol oxidase subunit 3 (20 kDa, Protein from Escherichia coli)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Heme o (838 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 4 (10 kDa, Protein from Escherichia coli)
- Copper (ii) ion (63 Da, Ligand)
- E. coli cytochrome bo3 ubiquinol oxidase dimer (Complex from Escherichia coli)
- Cytochrome bo(3) ubiquinol oxidase subunit 2 (28 kDa, Protein from Escherichia coli)
CryoEM structure of the Candida albicans Aro1 dimer
Resolution: 4.16 Å
EM Method: Single-particle
Fitted PDBs: 7u5s
Q-score: 0.07
Stogios PJ, Liston SD, Semper C, Quade B, Michalska K, Evdokimova E, Ram S, Otwinowski Z, Borek D, Cowen LE, Savchenko A
Life Sci Alliance (2022) 5 [ DOI: doi:10.26508/lsa.202101358 Pubmed: 35512834 ]
- Aro1 dimer from candida albicans (169 kDa, Complex from Candida albicans)
- Pentafunctional arom polypeptide (169 kDa, Protein from Candida albicans)
Structure of DHQS/EPSPS dimer from Candida albicans Aro1
Resolution: 3.43 Å
EM Method: Single-particle
Fitted PDBs: 7u5t
Q-score: 0.333
Stogios PJ, Liston SD, Semper C, Quade B, Michalska K, Evdokimova E, Ram S, Otwinowski Z, Borek D, Cowen LE, Savchenko A
Life Sci Alliance (2022) 5 [ DOI: doi:10.26508/lsa.202101358 Pubmed: 35512834 ]
- Aro1 from candida albicans (169 kDa, Complex from Candida albicans)
- Pentafunctional arom polypeptide (169 kDa, Protein from Candida albicans)
Structure of the SK/DHQase/DHSD dimer from Candida albicans Aro1
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 7u5u
Q-score: 0.49
Stogios PJ, Liston SD, Semper C, Quade B, Michalska K, Evdokimova E, Ram S, Otwinowski Z, Borek D, Cowen LE, Savchenko A
Life Sci Alliance (2022) 5 [ DOI: doi:10.26508/lsa.202101358 Pubmed: 35512834 ]
- Aro1 from candida albicans (169 kDa, Complex from Candida albicans)
- Pentafunctional arom polypeptide (169 kDa, Protein from Candida albicans)
Alpha-7 nicotinic acetylcholine receptor bound to alpha-bungarotoxin in a resting state
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7koo
Q-score: 0.517
Noviello CM, Gharpure A, Mukhtasimova N, Cabuco R, Baxter L, Borek D, Sine SM, Hibbs RE
Cell (2021) 184 pp. 2121- [ DOI: doi:10.1016/j.cell.2021.02.049 Pubmed: 33735609 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Neuronal acetylcholine receptor subunit alpha-7,soluble cytochrome b562 fusion (63 kDa, Protein from Homo sapiens)
- Neuronal acetylcholine receptor subunit alpha-7,soluble cytochrome b562 fusion (Complex from Homo sapiens)
- Alpha-bungarotoxin isoform v31 (Complex)
- Calcium ion (40 Da, Ligand)
- Alpha-bungarotoxin isoform v31 (7 kDa, Protein from Bungarus multicinctus)
- Complex between alpha-bungarotoxin and the human alpha-7 nicotinic acetylcholine receptor (Complex)
Alpha-7 nicotinic acetylcholine receptor bound to epibatidine in a desensitized state
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7koq
Q-score: 0.472
Noviello CM, Gharpure A, Mukhtasimova N, Cabuco R, Baxter L, Borek D, Sine SM, Hibbs RE
Cell (2021) 184 pp. 2121- [ DOI: doi:10.1016/j.cell.2021.02.049 Pubmed: 33735609 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Alpha 7 nicotinic receptor in complex with the agonist epibatidine (Complex from Homo sapiens)
- Epibatidine (208 Da, Ligand)
- Neuronal acetylcholine receptor subunit alpha-7,soluble cytochrome b562 fusion (63 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
Alpha-7 nicotinic acetylcholine receptor bound to epibatidine and PNU-120596 in the activated state
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7kox
Q-score: 0.481
Noviello CM, Gharpure A, Mukhtasimova N, Cabuco R, Baxter L, Borek D, Sine SM, Hibbs RE
Cell (2021) 184 pp. 2121- [ DOI: doi:10.1016/j.cell.2021.02.049 Pubmed: 33735609 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Epibatidine (208 Da, Ligand)
- Neuronal acetylcholine receptor subunit alpha-7,soluble cytochrome b562 fusion (63 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Alpha-7 nicotinic receptor in complex with epibatidine and pnu-120596 (Complex from Homo sapiens)
2.7 Angstrom cryo-EM reconstructions of glucose isomerase in the presence of substantial aberrations
Bromberg R, Guo Y, Borek D, Otwinowski Z
IUCrJ (2020) 7 pp. 445-452 [ DOI: 10.1107/s2052252520002444 ]
Image sets:
Bromberg R, Guo Y, Borek D, Otwinowski Z
IUCrJ (2020) 7 pp. 445-452 [ DOI: 10.1107/s2052252520002444 ]
Image sets: