Eaf3 CHD domain bound to the nucleosome
Resolution: 3.58 Å
EM Method: Single-particle
Fitted PDBs: 8ihm
Q-score: 0.434
Zhang Y, Xu M, Wang P, Zhou J, Wang G, Han S, Cai G, Wang X
Cell Res (2023) 33 pp. 971-974 [ Pubmed: 37845487 DOI: doi:10.1038/s41422-023-00884-2 ]
- Dna (164-mer) (50 kDa, DNA from Xenopus laevis)
- Dna (165-mer) (51 kDa, DNA from Xenopus laevis)
- Eaf3 chd domain bound to the nucleosome (Complex from Xenopus laevis)
- Rco1-abr (2 kDa, Protein from Saccharomyces cerevisiae)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Chromatin modification-related protein eaf3 (13 kDa, Protein from Saccharomyces cerevisiae)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Histone h2b (13 kDa, Protein from Xenopus laevis)
Cryo-EM structure of the Rpd3S core complex
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 8ihn
Q-score: 0.48
Zhang Y, Xu M, Wang P, Zhou J, Wang G, Han S, Cai G, Wang X
Cell Res (2023) 33 pp. 971-974 [ DOI: doi:10.1038/s41422-023-00884-2 Pubmed: 37845487 ]
- Transcriptional regulatory protein sin3 (175 kDa, Protein from Saccharomyces cerevisiae)
- Eaf3 chd domain bound to the nucleosome (Complex from Xenopus laevis)
- Histone h3 (2 kDa, Protein from Xenopus laevis)
- Calcium ion (40 Da, Ligand)
- Rco1 isoform 1 (78 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Histone deacetylase rpd3 (48 kDa, Protein from Saccharomyces cerevisiae)
- Chromatin modification-related protein eaf3 (45 kDa, Protein from Saccharomyces cerevisiae)
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 8iht
Q-score: 0.345
Zhang Y, Xu M, Wang P, Zhou J, Wang G, Han S, Cai G, Wang X
Cell Res (2023) 33 pp. 971-974 [ Pubmed: 37845487 DOI: doi:10.1038/s41422-023-00884-2 ]
- Rco1 isoform 1 (78 kDa, Protein from Saccharomyces cerevisiae)
- Chromatin modification-related protein eaf3 (45 kDa, Protein from Saccharomyces cerevisiae)
- Dna (164-mer) (50 kDa, DNA from Xenopus laevis)
- Transcriptional regulatory protein sin3 (175 kDa, Protein from Saccharomyces cerevisiae)
- Dna (165-mer) (51 kDa, DNA from Xenopus laevis)
- Eaf3 chd domain bound to the nucleosome (Complex from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone deacetylase rpd3 (48 kDa, Protein from Saccharomyces cerevisiae)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Zinc ion (65 Da, Ligand)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Calcium ion (40 Da, Ligand)
- Histone h2b (13 kDa, Protein from Xenopus laevis)
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 7wzr
Q-score: 0.275
Zhang Q, Wang P, Wu T, Zhang Y, Zheng Z, Zhou S, Qian D, Wang X, Cai G
Cell Discov (2022) 8 pp. 98-98 [ Pubmed: 36175395 DOI: doi:10.1038/s41421-022-00461-8 ]
- Serine/threonine-protein kinase mec1 (273 kDa, Protein from Saccharomyces cerevisiae S288C)
- Complex of mec1 and ddc2 (359 kDa, Complex from Saccharomyces cerevisiae)
- Dna damage checkpoint protein lcd1 (86 kDa, Protein from Saccharomyces cerevisiae S288C)
Cryo-EM structure of MEC1-DDC2-MMS
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7wzw
Q-score: 0.227
Zhang Q, Wang P, Wu T, Zhang Y, Zheng Z, Zhou S, Qian D, Wang X, Cai G
Cell Discov (2022) 8 pp. 98-98 [ Pubmed: 36175395 DOI: doi:10.1038/s41421-022-00461-8 ]
- Serine/threonine-protein kinase mec1 (273 kDa, Protein from Saccharomyces cerevisiae S288C)
- Mec1-ddc2 (Complex from Saccharomyces cerevisiae)
- Dna damage checkpoint protein lcd1 (86 kDa, Protein from Saccharomyces cerevisiae S288C)
Negative stain electron microscopy of the INO80 actin/Arp module state I.