Mycobacterium tuberculosis WT RNAP transcription initiation intermediate structure with Sorangicin
Resolution: 3.39 Å
EM Method: Single-particle
Fitted PDBs: 6vvx
Q-score: 0.425
Lilic M, Chen J, Boyaci H, Braffman N, Hubin EA, Herrmann J, Muller R, Mooney R, Landick R, Darst SA, Campbell EA
PNAS (2020) 117 pp. 30423-30432 [ DOI: doi:10.1073/pnas.2013706117 Pubmed: 33199626 ]
- Dna (65-mer) (27 kDa, DNA from Mycobacterium tuberculosis)
- Dna-directed rna polymerase subunit beta' (148 kDa, Protein from Mycobacterium tuberculosis)
- Mycobacterium tuberculosis rnap promoter open complex (Complex from Mycobacterium tuberculosis)
- Sorangicin a (807 Da, Ligand)
- Rna polymerase sigma factor siga (58 kDa, Protein from Mycobacterium tuberculosis)
- Dna (63-mer) (27 kDa, DNA from Mycobacterium tuberculosis)
- Dna-directed rna polymerase subunit beta (130 kDa, Protein from Mycobacterium tuberculosis)
- Rna polymerase-binding transcription factor card (17 kDa, Protein from Mycobacterium tuberculosis)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit alpha (37 kDa, Protein from Mycobacterium tuberculosis)
- Dna-directed rna polymerase subunit omega (11 kDa, Protein from Mycobacterium tuberculosis)
- Rna polymerase-binding protein rbpa (12 kDa, Protein from Mycobacterium tuberculosis)
Mycobacterium tuberculosis WT RNAP transcription open promoter complex with Sorangicin
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 6vvy
Q-score: 0.436
Lilic M, Chen J, Boyaci H, Braffman N, Hubin EA, Herrmann J, Muller R, Mooney R, Landick R, Darst SA, Campbell EA
PNAS (2020) 117 pp. 30423-30432 [ DOI: doi:10.1073/pnas.2013706117 Pubmed: 33199626 ]
- Mycobacterium tuberculosis wt rnap open promoter complex (Complex from Mycobacterium tuberculosis)
- Dna (65-mer) (27 kDa, DNA from Mycobacterium tuberculosis)
- Dna-directed rna polymerase subunit beta' (148 kDa, Protein from Mycobacterium tuberculosis)
- Sorangicin a (807 Da, Ligand)
- Rna polymerase sigma factor siga (58 kDa, Protein from Mycobacterium tuberculosis)
- Dna (65-mer) (27 kDa, DNA from Mycobacterium tuberculosis)
- Dna-directed rna polymerase subunit beta (130 kDa, Protein from Mycobacterium tuberculosis)
- Rna polymerase-binding transcription factor card (17 kDa, Protein from Mycobacterium tuberculosis)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit alpha (37 kDa, Protein from Mycobacterium tuberculosis)
- Dna-directed rna polymerase subunit omega (11 kDa, Protein from Mycobacterium tuberculosis)
- Rna polymerase-binding protein rbpa (12 kDa, Protein from Mycobacterium tuberculosis)
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 6vvz
Q-score: 0.361
Lilic M, Chen J, Boyaci H, Braffman N, Hubin EA, Herrmann J, Muller R, Mooney R, Landick R, Darst SA, Campbell EA
PNAS (2020) 117 pp. 30423-30432 [ Pubmed: 33199626 DOI: doi:10.1073/pnas.2013706117 ]
- Rna polymerase-binding transcription factor card (17 kDa, Protein from Mycobacterium tuberculosis)
- Magnesium ion (24 Da, Ligand)
- Rna polymerase sigma factor siga (58 kDa, Protein from Mycobacterium tuberculosis)
- Mycobacterium tuberculosis rnap s456l mutant promoter melting intermediate complex (Complex from Mycobacterium tuberculosis)
- Dna-directed rna polymerase subunit omega (11 kDa, Protein from Mycobacterium tuberculosis)
- Dna-directed rna polymerase subunit alpha (37 kDa, Protein from Mycobacterium tuberculosis)
- Dna (62-mer) (27 kDa, DNA from Mycobacterium tuberculosis)
- Sorangicin a (807 Da, Ligand)
- Dna-directed rna polymerase subunit beta' (148 kDa, Protein from Mycobacterium tuberculosis)
- Zinc ion (65 Da, Ligand)
- Dna (65-mer) (27 kDa, DNA from Mycobacterium tuberculosis)
- Rna polymerase-binding protein rbpa (12 kDa, Protein from Mycobacterium tuberculosis)
- Dna-directed rna polymerase subunit beta (130 kDa, Protein from Mycobacterium tuberculosis)
Mycobacterium tuberculosis RNAP S456L mutant open promoter complex
Resolution: 3.59 Å
EM Method: Single-particle
Fitted PDBs: 6vw0
Q-score: 0.42
Lilic M, Chen J, Boyaci H, Braffman N, Hubin EA, Herrmann J, Muller R, Mooney R, Landick R, Darst SA, Campbell EA
PNAS (2020) 117 pp. 30423-30432 [ DOI: doi:10.1073/pnas.2013706117 Pubmed: 33199626 ]
- Dna-directed rna polymerase subunit beta (130 kDa, Protein from Mycobacterium tuberculosis)
- Dna (65-mer) (27 kDa, DNA from Mycobacterium tuberculosis)
- Dna-directed rna polymerase subunit beta' (148 kDa, Protein from Mycobacterium tuberculosis)
- Rna polymerase sigma factor siga (58 kDa, Protein from Mycobacterium tuberculosis)
- Mycobacterium tuberculosis rnap s456l mutant open promoter complex (Complex from Mycobacterium tuberculosis)
- Dna (65-mer) (27 kDa, DNA from Mycobacterium tuberculosis)
- Rna polymerase-binding transcription factor card (17 kDa, Protein from Mycobacterium tuberculosis)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit alpha (37 kDa, Protein from Mycobacterium tuberculosis)
- Dna-directed rna polymerase subunit omega (11 kDa, Protein from Mycobacterium tuberculosis)
- Rna polymerase-binding protein rbpa (12 kDa, Protein from Mycobacterium tuberculosis)
Mycobacterium tuberculosis Wildtype-RNAP holoenzyme/RbpA/CarD/Sor/AP3 - PreRP2 class
Lilic M, Chen J, Boyaci H, Braffman N, Hubin EA, Herrmann J, Muller R, Mooney R, Landick R, Darst SA, Campbell EA
PNAS (2020) 117 pp. 30423-30432 [ Pubmed: 33199626 DOI: doi:10.1073/pnas.2013706117 ]
Mycobacterium tuberculosis Wildtype-RNAP holoenzyme/RbpA/CarD/Sor/AP3 - RP2 class
Lilic M, Chen J, Boyaci H, Braffman N, Hubin EA, Herrmann J, Muller R, Mooney R, Landick R, Darst SA, Campbell EA
PNAS (2020) 117 pp. 30423-30432 [ DOI: doi:10.1073/pnas.2013706117 Pubmed: 33199626 ]
Mycobacterium tuberculosis Wildtype-RNAP holoenzyme/RbpA/CarD/Sor/AP3 - RPo class
Lilic M, Chen J, Boyaci H, Braffman N, Hubin EA, Herrmann J, Muller R, Mooney R, Landick R, Darst SA, Campbell EA
PNAS (2020) 117 pp. 30423-30432 [ Pubmed: 33199626 DOI: doi:10.1073/pnas.2013706117 ]
Mycobacterium tuberculosis BetaS456L-RNAP holoenzyme/RbpA/CarD/Sor/AP3 - PreRP2 class
Lilic M, Chen J, Boyaci H, Braffman N, Hubin EA, Herrmann J, Muller R, Mooney R, Landick R, Darst SA, Campbell EA
PNAS (2020) 117 pp. 30423-30432 [ DOI: doi:10.1073/pnas.2013706117 Pubmed: 33199626 ]
Mycobacterium tuberculosis BetaS456L-RNAP holoenzyme/RbpA/CarD/Sor/AP3 - RP2 class
Lilic M, Chen J, Boyaci H, Braffman N, Hubin EA, Herrmann J, Muller R, Mooney R, Landick R, Darst SA, Campbell EA
PNAS (2020) 117 pp. 30423-30432 [ Pubmed: 33199626 DOI: doi:10.1073/pnas.2013706117 ]
Mycobacterium tuberculosis BetaS456L-RNAP holoenzyme/RbpA/CarD/Sor/AP3 - RPo class
Lilic M, Chen J, Boyaci H, Braffman N, Hubin EA, Herrmann J, Muller R, Mooney R, Landick R, Darst SA, Campbell EA
PNAS (2020) 117 pp. 30423-30432 [ DOI: doi:10.1073/pnas.2013706117 Pubmed: 33199626 ]