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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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primary_citation_author:"Chen J" AND xref_links:"alphafold" AND xref_links:"scop2"

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EMD-30825

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bovine 20S immunoproteasome

Release date: Jan. 20, 2021
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7dr7
Q-score: 0.448

Chen J, Wang Y, Xu C, Chen K, Zhao Q, Wang S, Yin Y, Peng C, Ding Z, Cong Y

Nat Commun (2021) 12 pp. 739-739 [ Pubmed: 33531497 DOI: doi:10.1038/s41467-021-21028-3 ]

Sample:

Proteasome subunit alpha type-5 (26 kDa, Protein from Bos taurus)
Proteasome subunit beta type-9 (23 kDa, Protein from Bos taurus)
Proteasome subunit beta type-1 (26 kDa, Protein from Bos taurus)
20s immunoproteasome purified from bovine spleen (Complex from Bos taurus)
Proteasome subunit alpha type-7 (27 kDa, Protein from Bos taurus)
Proteasome subunit alpha type-4 (29 kDa, Protein from Bos taurus)
Proteasome subunit beta type-4 (29 kDa, Protein from Bos taurus)
Proteasome subunit alpha type-6 (27 kDa, Protein from Bos taurus)
Proteasome subunit beta type-2 (22 kDa, Protein from Bos taurus)
Proteasome subunit beta type-3 (23 kDa, Protein from Bos taurus)
Proteasome subunit alpha type-3 (28 kDa, Protein from Bos taurus)
Proteasome subunit alpha type-1 (29 kDa, Protein from Bos taurus)
Proteasome subunit beta type-10 (29 kDa, Protein from Bos taurus)
Proteasome subunit beta type-8 (30 kDa, Protein from Bos taurus)
Proteasome subunit alpha type-2 (25 kDa, Protein from Bos taurus)

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EMD-30828

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Bovine 20S immunoproteasome in complex with two human PA28alpha-beta activators

Release date: Jan. 20, 2021
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7drw
Q-score: 0.179

Chen J, Wang Y, Xu C, Chen K, Zhao Q, Wang S, Yin Y, Peng C, Ding Z, Cong Y

Nat Commun (2021) 12 pp. 739-739 [ Pubmed: 33531497 DOI: doi:10.1038/s41467-021-21028-3 ]

Sample:

Proteasome subunit alpha type-5 (26 kDa, Protein from Bos taurus)
Proteasome subunit beta type-9 (23 kDa, Protein from Bos taurus)
Proteasome activator complex subunit 1 (28 kDa, Protein from Homo sapiens)
Proteasome activator complex subunit 2 (27 kDa, Protein from Homo sapiens)
20s immunoproteasome purified from bovine spleen (Complex from Bos taurus)
Proteasome subunit alpha type-7 (27 kDa, Protein from Bos taurus)
Proteasome subunit beta type-1 (26 kDa, Protein from Bos taurus)
Proteasome subunit alpha type-4 (29 kDa, Protein from Bos taurus)
Proteasome subunit beta type-4 (29 kDa, Protein from Bos taurus)
Proteasome subunit alpha type-6 (27 kDa, Protein from Bos taurus)
Proteasome subunit beta type-2 (22 kDa, Protein from Bos taurus)
Proteasome subunit beta type-3 (23 kDa, Protein from Bos taurus)
Proteasome subunit alpha type-3 (28 kDa, Protein from Bos taurus)
Proteasome subunit alpha type-1 (29 kDa, Protein from Bos taurus)
Proteasome subunit beta type-10 (29 kDa, Protein from Bos taurus)
Proteasome subunit beta type-8 (30 kDa, Protein from Bos taurus)
Proteasome subunit alpha type-2 (25 kDa, Protein from Bos taurus)

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EMD-9616

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Cryo-EM structure of yeast Ribonuclease P

Release date: Oct. 17, 2018
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 6agb
Q-score: 0.311

Lan P, Tan M, Zhang Y, Niu S, Chen J, Shi S, Qiu S, Wang X, Peng X, Cai G, Cheng H, Wu J, Li G, Lei M

Science (2018) 362 [ DOI: doi:10.1126/science.aat6678 Pubmed: 30262633 ]

Sample:

Ribonuclease p protein subunit rpr2 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Rnase p (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribonucleases p/mrp protein subunit pop3 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Zinc ion (65 Da, Ligand)
Ribonuclease p/mrp protein subunit pop5 (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribonucleases p/mrp protein subunit pop8 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Rnases mrp/p 32.9 kda subunit (32 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribonuclease p rna (118 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribonucleases p/mrp protein subunit pop1 (100 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribonucleases p/mrp protein subunit pop7 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribonucleases p/mrp protein subunit pop6 (18 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribonuclease p/mrp protein subunit rpp1 (32 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))

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EMD-6695

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Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Release date: March 29, 2017
Resolution: 8.7 Å
EM Method: Single-particle
Fitted PDBs: 5wyj
Q-score: 0.16

Sun Q, Zhu X, Qi J, An W, Lan P, Tan D, Chen R, Wang B, Zheng S, Zhang C, Chen X, Zhang W, Chen J, Dong MQ, Ye K

eLife (2017) 6 [ DOI: doi:10.7554/eLife.22086 Pubmed: 28244370 ]

Sample:

40s ribosomal protein s22-a (14 kDa, Protein from Baker's yeast)
Helical domain protein (137 kDa, Protein from Baker's yeast)
Pre-rrna-processing protein pno1 (30 kDa, Protein from Baker's yeast)
Unassigned helices (87 kDa, Protein from Baker's yeast)
Utp17 (76 kDa, Protein from Baker's yeast)
Ribosomal rna-processing protein 9 (65 kDa, Protein from Baker's yeast)
Utp20 (212 kDa, Protein from Baker's yeast)
40s ribosomal protein s12 (15 kDa, Protein from Baker's yeast)
Rna 3'-terminal phosphate cyclase-like protein (40 kDa, Protein from Baker's yeast)
Ribosomal rna small subunit methyltransferase nep1 (27 kDa, Protein from Baker's yeast)
Ribosome biogenesis protein utp30 (31 kDa, Protein from Baker's yeast)
U3 small nucleolar ribonucleoprotein protein imp4 (33 kDa, Protein from Baker's yeast)
13 kda ribonucleoprotein-associated protein (13 kDa, Protein from Baker's yeast)
Utp8 (60 kDa, Protein from Baker's yeast)
Rrna biogenesis protein rrp5 (193 kDa, Protein from Baker's yeast)
40s ribosomal protein s6-a (27 kDa, Protein from Baker's yeast)
40s ribosomal protein s13 (17 kDa, Protein from Baker's yeast)
Mpp10,u3 small nucleolar rna-associated protein mpp10 (54 kDa, Protein from Baker's yeast)
Utp5 (54 kDa, Protein from Baker's yeast)
40s ribosomal protein s1-a (28 kDa, Protein from Baker's yeast)
Utp7 (47 kDa, Protein from Baker's yeast)
40s ribosomal protein s14-a (14 kDa, Protein from Baker's yeast)
40s ribosomal protein s27-a (8 kDa, Protein from Baker's yeast)
90s small subunit pre-ribosome (dhr1-depleted, enp1-tap) (Complex from Saccharomyces cerevisiae)
Utp4 (66 kDa, Protein from Baker's yeast)
U3 small nucleolar rna-associated protein 22 (140 kDa, Protein from Baker's yeast)
40s ribosomal protein s8-a (22 kDa, Protein from Baker's yeast)
40s ribosomal protein s7-a (21 kDa, Protein from Baker's yeast)
Utp9 (48 kDa, Protein from Baker's yeast)
40s ribosomal protein s9-a (22 kDa, Protein from Baker's yeast)
Rrna-processing protein fcf1 (21 kDa, Protein from Baker's yeast)
Periodic tryptophan protein 2 (104 kDa, Protein from Baker's yeast)
Ribosomal rna-processing protein 7 (34 kDa, Protein from Baker's yeast)
18s ribosomal rna (583 kDa, RNA from Baker's yeast)
U3 small nucleolar ribonucleoprotein protein imp3 (21 kDa, Protein from Baker's yeast)
Utp15 (43 kDa, Protein from Baker's yeast)
U3 small nucleolar rna-associated protein 18 (66 kDa, Protein from Baker's yeast)
40s ribosomal protein s30-a (7 kDa, Protein from Baker's yeast)
Rrna 2'-o-methyltransferase fibrillarin (34 kDa, Protein from Baker's yeast)
U3 rna (106 kDa, RNA from Baker's yeast)
Nucleolar protein 56 (56 kDa, Protein from Baker's yeast)
U3 small nucleolar rna-associated protein 12 (106 kDa, Protein from Baker's yeast)
40s ribosomal protein s4-a (29 kDa, Protein from Baker's yeast)
Helical domain protein (84 kDa, Protein from Baker's yeast)
Enp2 (60 kDa, Protein from Baker's yeast)
Essential nuclear protein 1 (55 kDa, Protein from Baker's yeast)
5ets rna (225 kDa, RNA from Baker's yeast)
Sof1 (41 kDa, Protein from Baker's yeast)
40s ribosomal protein s24-a (15 kDa, Protein from Baker's yeast)
Krr1 small subunit processome component (37 kDa, Protein from Baker's yeast)
40s ribosomal protein s28-a (7 kDa, Protein from Baker's yeast)
Utp11 (21 kDa, Protein from Baker's yeast)
U3 small nucleolar rna-associated protein 13 (91 kDa, Protein from Baker's yeast)
U3 small nucleolar rna-associated protein 10,utp10 (173 kDa, Protein from Baker's yeast)
Nucleolar protein 58 (57 kDa, Protein from Baker's yeast)
40s ribosomal protein s16-a (15 kDa, Protein from Baker's yeast)
40s ribosomal protein s23-a (16 kDa, Protein from Baker's yeast)
Ribosome biogenesis protein bms1 (135 kDa, Protein from Baker's yeast)
40s ribosomal protein s5 (25 kDa, Protein from Baker's yeast)
Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Baker's yeast)
U3 small nucleolar rna-associated protein 21 (104 kDa, Protein from Baker's yeast)
40s ribosomal protein s11-a (17 kDa, Protein from Baker's yeast)

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Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

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EMDB [4]

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