CryoEM structure of ZIKV rsNS1
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8wn8
Q-score: 0.33
Chew BLA, Ngoh AQ, Phoo WW, Weng MJG, Sheng HJ, Chan KWK, Tan EYJ, Gelbart T, Xu C, Tan GS, Vasudevan SG, Luo D
Npj Viruses (2024) 2 pp. 14- [ DOI: doi:10.1038/s44298-024-00024-6 ]
- Zika virus (Virus from Zika virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Non-structural protein 1 (41 kDa, Protein from Zika virus)
ZIKV rsNS1 in complex with Fab AA12 and anti-fab nanobody
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8wnp
Q-score: 0.428
Chew BLA, Ngoh AQ, Phoo WW, Weng MJG, Sheng HJ, Chan KWK, Tan EYJ, Gelbart T, Xu C, Tan GS, Vasudevan SG, Luo D
Npj Viruses (2024) 2 pp. 14- [ DOI: doi:10.1038/s44298-024-00024-6 ]
- Vh chains (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Vl chains (23 kDa, Protein from Homo sapiens)
- Anti-fab nanobody (13 kDa, Protein from Lama glama)
- Zikv rsns1 in complex with fab aa12 and anti-fab nanobody (Complex from Zika virus)
- Non-structural protein 1 (40 kDa, Protein from Zika virus)
ZIKV rsNS1 in complex with Fab GB5 and anti-fab nanobody
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8wnu
Q-score: 0.331
Chew BLA, Ngoh AQ, Phoo WW, Weng MJG, Sheng HJ, Chan KWK, Tan EYJ, Gelbart T, Xu C, Tan GS, Vasudevan SG, Luo D
Npj Viruses (2024) 2 pp. 14- [ DOI: doi:10.1038/s44298-024-00024-6 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Anti-fab nanobody (13 kDa, Protein from Lama glama)
- Vl (23 kDa, Protein from Homo sapiens)
- Non-structural protein 1 (40 kDa, Protein from Zika virus)
- Zikv rsns1 in complex with fab gb5 and anti-fab nanobody (Complex from Zika virus)
- Vh (23 kDa, Protein from Homo sapiens)
CryoEM structure of ZIKV rsNS1 filament
Resolution: 8.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 8wo0
Q-score: 0.088
Chew BLA, Ngoh AQ, Phoo WW, Weng MJG, Sheng HJ, Chan KWK, Tan EYJ, Gelbart T, Xu C, Tan GS, Vasudevan SG, Luo D
Npj Viruses (2024) 2 pp. 14- [ DOI: doi:10.1038/s44298-024-00024-6 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Zikv recombinantly secreted ns1 filament (Complex from Zika virus)
- Non-structural protein 1 (40 kDa, Protein from Zika virus)
ZIKV rsNS1 in complex with Fab EB9 and anti-fab nanobody
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8wo4
Q-score: 0.416
Chew BLA, Ngoh AQ, Phoo WW, Weng MJG, Sheng HJ, Chan KWK, Tan EYJ, Gelbart T, Xu C, Tan GS, Vasudevan SG, Luo D
Npj Viruses (2024) 2 pp. 14- [ DOI: doi:10.1038/s44298-024-00024-6 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Non-structural protein 1 (41 kDa, Protein from Zika virus)
- Zikv rsns1 in complex with fab aa12 and anti-fab nanobody (Complex from Homo sapiens)
- Vl (23 kDa, Protein from Homo sapiens)
- Vh (24 kDa, Protein from Homo sapiens)
- Anti-fab nanobody (15 kDa, Protein from Lama glama)
CryoEM structure of isNS1 in complex with Fab56.2 and HDL
Chew BLA, Ngoh ANQ, Phoo WW, Chan KWK, Ser Z, Tulsian NK, Lim SS, Weng MJG, Watanabe S, Choy MM, Low J, Ooi EE, Ruedl C, Sobota RM, Vasudevan SG, Luo D
eLife (2024) 12 [ DOI: doi:10.7554/eLife.90762 Pubmed: 38787378 ]
- Isns1ts (Complex from Dengue virus type 2)
- Monoclonal antibody fragment 56.2 (Complex from Mus musculus)
- Fab 56.2 light chain (Macromolecule from Mus musculus)
- Core protein (Macromolecule from Dengue virus type 2)
- Ternary complex of fab56.2 with dengue virus nonstructural protein 1 and high density lipoprotein (Complex)
- Fab 56.2 heavy chain (Macromolecule from Mus musculus)
CryoEM structure of isNS1 in complex with Fab56.2
Chew BLA, Ngoh ANQ, Phoo WW, Chan KWK, Ser Z, Tulsian NK, Lim SS, Weng MJG, Watanabe S, Choy MM, Low J, Ooi EE, Ruedl C, Sobota RM, Vasudevan SG, Luo D
eLife (2024) 12 [ DOI: doi:10.7554/eLife.90762 Pubmed: 38787378 ]
- Fab56.2 (Complex from Mus musculus)
- Isns1ts (Complex from Dengue virus type 2)
- Fab56.2 heavy chain (Macromolecule from Mus musculus)
- Core protein (Macromolecule from dengue virus type 2)
- Ternary complex of fab56.2 with dengue virus nonstructural protein 1 and high density lipoprotein (Complex)
- Fab56.2 light chain (Macromolecule from Mus musculus)