The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7ksq
Q-score: 0.544
Gorski C, Riddle R, Toporik H, Da Z, Dobson Z, Williams D, Mazor Y
Nat Plants (2022) 8 pp. 307-316 [ Pubmed: 35190662 DOI: doi:10.1038/s41477-022-01099-w ]
- Photosystem i iron-sulfur center (8 kDa, Protein from Physcomitrium patens)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Physcomitrium patens)
- Psi-g (9 kDa, Protein from Physcomitrium patens)
- Phylloquinone (450 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Psi subunit v (16 kDa, Protein from Physcomitrium patens)
- Chlorophyll a (893 Da, Ligand)
- Psao (9 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Physcomitrium patens)
- Chlorophyll b (907 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Psi (Complex from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Physcomitrium patens)
- Psak (8 kDa, Protein from Physcomitrium patens)
- Water (18 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Physcomitrium patens)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psae (7 kDa, Protein from Physcomitrium patens)
- Psi-f (17 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Physcomitrium patens)
- Psad (15 kDa, Protein from Physcomitrium patens)
- Psah (9 kDa, Protein from Physcomitrium patens)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna
Resolution: 3.76 Å
EM Method: Single-particle
Fitted PDBs: 7ku5
Q-score: 0.387
Gorski C, Riddle R, Toporik H, Da Z, Dobson Z, Williams D, Mazor Y
Nat Plants (2022) 8 pp. 307-316 [ Pubmed: 35190662 DOI: doi:10.1038/s41477-022-01099-w ]
- Psi (Complex from Physcomitrium patens)
- Chlorophyll a (893 Da, Ligand)
- Psao (9 kDa, Protein from Physcomitrium patens)
- Beta-carotene (536 Da, Ligand)
The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7kux
Q-score: 0.546
Gorski C, Riddle R, Toporik H, Da Z, Dobson Z, Williams D, Mazor Y
Nat Plants (2022) 8 pp. 307-316 [ Pubmed: 35190662 DOI: doi:10.1038/s41477-022-01099-w ]
- Photosystem i iron-sulfur center (8 kDa, Protein from Physcomitrium patens)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Physcomitrium patens)
- Psi-g (9 kDa, Protein from Physcomitrium patens)
- Phylloquinone (450 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Psi subunit v (16 kDa, Protein from Physcomitrium patens)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Physcomitrium patens)
- Chlorophyll b (907 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Psi (Complex from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Physcomitrium patens)
- Psak (8 kDa, Protein from Physcomitrium patens)
- Water (18 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Physcomitrium patens)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psae (7 kDa, Protein from Physcomitrium patens)
- Psi-f (17 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Physcomitrium patens)
- Psad (15 kDa, Protein from Physcomitrium patens)
- Psah (9 kDa, Protein from Physcomitrium patens)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
Trimeric Photosystem I from the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 6vpv
Q-score: 0.569
Dobson Z, Ahad S, Vanlandingham J, Toporik H, Vaughn N, Vaughn M, Williams D, Reppert M, Fromme P, Mazor Y
eLife (2021) 10 [ DOI: doi:10.7554/eLife.67518 Pubmed: 34435952 ]
- Phylloquinone (450 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Cyanobacterium aponinum 0216)
- Chlorophyll a isomer (893 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Cyanobacterium aponinum 0216)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Cyanobacterium aponinum 0216)
- Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Cyanobacterium aponinum 0216)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Trimeric psi from a high light tolerant cyanobacteria, cyanobacterium aponinum (Complex from Cyanobacterium aponinum 0216)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Cyanobacterium aponinum 0216)
- Photosystem i reaction center subunit psak (7 kDa, Protein from Cyanobacterium aponinum 0216)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Psi-f (15 kDa, Protein from Cyanobacterium aponinum 0216)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Cyanobacterium aponinum 0216)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Cyanobacterium aponinum 0216)
- Photosystem i p700 chlorophyll a apoprotein a1 (81 kDa, Protein from Cyanobacterium aponinum 0216)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Cyanobacterium aponinum 0216)
The structure of a red shifted photosystem I complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6uzv
Q-score: 0.566
Toporik H, Khmelnitskiy A, Dobson Z, Riddle R, Williams D, Lin S, Jankowiak R, Mazor Y
Nat Commun (2020) 11 pp. 5279-5279 [ Pubmed: 33077842 DOI: doi:10.1038/s41467-020-18884-w ]
- Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Beta-carotene (536 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit iii (18 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Photosystem i reaction center subunit viii (4 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Photosystem i reaction center subunit ix (4 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Psi (Complex from Synechocystis sp. PCC 6803)
- Photosystem i reaction center subunit psak 2 (9 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Photosystem i reaction center subunit iv (8 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Photosystem i reaction center subunit xi (16 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Iron/sulfur cluster (351 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))