Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 8k0c
Q-score: 0.397
Fan P, Sun M, Zhang X, Zhang H, Liu Y, Yao Y, Li M, Fang T, Sun B, Chen Z, Chi X, Chen L, Peng C, Chen Z, Zhang G, Ren Y, Liu Z, Li Y, Li J, Li E, Guan W, Li S, Gong R, Zhang K, Yu C, Chiu S
Nat Commun (2024) 15 pp. 4330-4330 [ Pubmed: 38773072 DOI: doi:10.1038/s41467-024-48601-w ]
- Light chain of 1e5 fab fragments (23 kDa, Protein from Macaca mulatta)
- Cryo-em structure of conformation 1 of complex of nipah virus attachment glycoprotein g with 1e5 neutralizing antibody (Complex from Nipah virus)
- Heavy chain of 1e5 fab fragments (26 kDa, Protein from Macaca mulatta)
- Glycoprotein g (6 kDa, Protein from Nipah virus)
- Glycoprotein g (56 kDa, Protein from Nipah virus)
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 8k0d
Q-score: 0.461
Fan P, Sun M, Zhang X, Zhang H, Liu Y, Yao Y, Li M, Fang T, Sun B, Chen Z, Chi X, Chen L, Peng C, Chen Z, Zhang G, Ren Y, Liu Z, Li Y, Li J, Li E, Guan W, Li S, Gong R, Zhang K, Yu C, Chiu S
Nat Commun (2024) 15 pp. 4330-4330 [ Pubmed: 38773072 DOI: doi:10.1038/s41467-024-48601-w ]
- Glycoprotein g (45 kDa, Protein from Nipah virus)
- The light chain of 1e5 (23 kDa, Protein from Macaca mulatta)
- The heavy chain of 1e5 (26 kDa, Protein from Macaca mulatta)
- Cryo-em structure of conformation 2 of complex of nipah virus attachment g with 1e5 neutralizing antibody (Complex from Nipah virus)
Nipah virus Attachment glycoprotein with 41-6 antibody fragment
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 8k3c
Q-score: 0.44
Chen L, Sun M, Zhang H, Zhang X, Yao Y, Li M, Li K, Fan P, Zhang H, Qin Y, Zhang Z, Li E, Chen Z, Guan W, Li S, Yu C, Zhang K, Gong R, Chiu S
Nat Commun (2024) 15 pp. 2987-2987 [ DOI: doi:10.1038/s41467-024-47213-8 Pubmed: 38582870 ]
- Heavy chain of 41-6 fab fragments (25 kDa, Protein from Homo sapiens)
- Light chain of 41-6 fab fragment (22 kDa, Protein from Homo sapiens)
- Cryo-em structure of complex of attachment glycoprotein g with 41-6 fab fragment (Complex from Henipavirus nipahense)
- Glycoprotein g (52 kDa, Protein from Henipavirus nipahense)
S protein of Delta variant in complex with ZWD12
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7wwl
Q-score: 0.444
Chi X, Guo Y, Zhang G, Sun H, Zhang J, Li M, Chen Z, Han J, Zhang Y, Zhang X, Fan P, Zhang Z, Wang B, Zai X, Han X, Hao M, Fang T, Xu J, Wu S, Chen Y, Fang Y, Dong Y, Sun B, Zhang J, Li J, Zhao G, Yu C, Zhou Q, Chen W
Signal Transduct Target Ther (2022) 7 pp. 139-139 [ DOI: doi:10.1038/s41392-022-00987-z Pubmed: 35478188 ]
- Zwd12 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Heavy chain of zwd12 (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S protein of delta variant (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of zwd12 (11 kDa, Protein from Homo sapiens)
- S protein of delta variant in complex with zwd12 (Complex)
S protein of Delta variant in complex with ZWD12 focused on RBD_ZWD12 sub-complex
Chi X, Guo Y, Zhang G, Sun H, Zhang J, Li M, Chen Z, Han J, Zhang Y, Zhang X, Fan P, Zhang Z, Wang B, Zai X, Han X, Hao M, Fang T, Xu J, Wu S, Chen Y, Fang Y, Dong Y, Sun B, Zhang J, Li J, Zhao G, Yu C, Zhou Q, Chen W
Signal Transduct Target Ther (2022) 7 pp. 139-139 [ DOI: doi:10.1038/s41392-022-00987-z Pubmed: 35478188 ]
S protein of Delta variant in complex with ZWC6
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7wwm
Q-score: 0.338
Chi X, Guo Y, Zhang G, Sun H, Zhang J, Li M, Chen Z, Han J, Zhang Y, Zhang X, Fan P, Zhang Z, Wang B, Zai X, Han X, Hao M, Fang T, Xu J, Wu S, Chen Y, Fang Y, Dong Y, Sun B, Zhang J, Li J, Zhao G, Yu C, Zhou Q, Chen W
Signal Transduct Target Ther (2022) 7 pp. 139-139 [ DOI: doi:10.1038/s41392-022-00987-z Pubmed: 35478188 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S protein of delta variant (Complex from Severe acute respiratory syndrome coronavirus 2)
- S protein of delta variant in complex with zwc6 (Complex)
- Zwc6 (Complex from Homo sapiens)
- Heavy chain of zwc6 (13 kDa, Protein from Homo sapiens)
- Heavy chain of zwc6 (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
S protein of Delta variant in complex with ZWC6 focused on RBD_ZWC6 sub-complex
Chi X, Guo Y, Zhang G, Sun H, Zhang J, Li M, Chen Z, Han J, Zhang Y, Zhang X, Fan P, Zhang Z, Wang B, Zai X, Han X, Hao M, Fang T, Xu J, Wu S, Chen Y, Fang Y, Dong Y, Sun B, Zhang J, Li J, Zhao G, Yu C, Zhou Q, Chen W
Signal Transduct Target Ther (2022) 7 pp. 139-139 [ DOI: doi:10.1038/s41392-022-00987-z Pubmed: 35478188 ]
cryo EM map of the S protein of SARS-CoV-2 in complex bound with 4A8
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7c2l
Q-score: 0.362
Chi X, Yan R, Zhang J, Zhang G, Zhang Y, Hao M, Zhang Z, Fan P, Dong Y, Yang Y, Chen Z, Guo Y, Zhang J, Li Y, Song X, Chen Y, Xia L, Fu L, Hou L, Xu J, Yu C, Li J, Zhou Q, Chen W
Science (2020) 369 pp. 650-655 [ DOI: doi:10.1126/science.abc6952 Pubmed: 32571838 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Light chain of 4a8 (24 kDa, Protein from Homo sapiens)
- Heavy chain of 4a8 (50 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 in complex bound with 4a8 (Complex from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Cryo EM map of the interface between NTD of SARS-CoV-2 and 4A8