PDI-containing spoke of a hexagonal wireframe DNA origami
Gorman J, Hart SM, John T, Castellanos MA, Harris D, Parsons MF, Banal JL, Willard AP, Schlau-Cohen GS, Bathe M
Chem (2024) 10 pp. 1553-1575 [ DOI: doi:10.1016/j.chempr.2024.03.007 Pubmed: 38827435 ]
LH2-LH3 antenna in antiparallel configuration embedded in a nanodisc
Resolution: 6.4 Å
EM Method: Single-particle
Fitted PDBs: 8fb9
Q-score: 0.164
Wang D, Fiebig OC, Harris D, Toporik H, Ji Y, Chuang C, Nairat M, Tong AL, Ogren JI, Hart SM, Cao J, Sturgis JN, Mazor Y, Schlau-Cohen GS
PNAS (2023) 120 pp. e2220477120-e2220477120 [ Pubmed: 37399405 DOI: doi:10.1073/pnas.2220477120 ]
- Light-harvesting protein b-800/850 beta 1 chain (5 kDa, Protein from Magnetospirillum molischianum)
- Bacteriochlorophyll a (911 Da, Ligand)
- Light-harvesting protein b800-820 alpha chain (6 kDa, Protein from Magnetospirillum molischianum)
- Light-harvesting protein b800-820 beta chain (5 kDa, Protein from Magnetospirillum molischianum)
- Lycopene (536 Da, Ligand)
- Lhii-lhiii complex in nanodisk (200 kDa, Complex from Magnetospirillum molischianum)
- Light-harvesting protein b-800/850 alpha chain (5 kDa, Protein from Magnetospirillum molischianum)
LH2-LH3 antenna in parallel configuration embedded in a nanodisc
Resolution: 11.3 Å
EM Method: Single-particle
Fitted PDBs: 8fbb
Q-score: 0.049
Wang D, Fiebig OC, Harris D, Toporik H, Ji Y, Chuang C, Nairat M, Tong AL, Ogren JI, Hart SM, Cao J, Sturgis JN, Mazor Y, Schlau-Cohen GS
PNAS (2023) 120 pp. e2220477120-e2220477120 [ Pubmed: 37399405 DOI: doi:10.1073/pnas.2220477120 ]
- Light-harvesting protein b-800/850 alpha chain (5 kDa, Protein from Magnetospirillum molischianum)
- Light-harvesting protein b-800/850 beta 1 chain (5 kDa, Protein from Magnetospirillum molischianum)
- Bacteriochlorophyll a (911 Da, Ligand)
- Light-harvesting protein b800-820 alpha chain (6 kDa, Protein from Magnetospirillum molischianum)
- Light-harvesting protein b800-820 beta chain (5 kDa, Protein from Magnetospirillum molischianum)
- Lycopene (536 Da, Ligand)
- Lhii-lhiii complex in nanodisk (200 kDa, Complex from Magnetospirillum molischianum)
Energetic robustness to large scale structural dynamics in a photosynthetic supercomplex
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7umh
Q-score: 0.583
Harris D, Toporik H, Schlau-Cohen GS, Mazor Y
Nat Commun (2023) 14 pp. 4650-4650 [ Pubmed: 37532717 DOI: doi:10.1038/s41467-023-40146-8 ]
- Beta,beta-caroten-4-one (550 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Synechocystis sp. PCC 6803)
- Chlorophyll a isomer (893 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Psi-isia (2 MDa, Complex from Synechocystis sp. PCC 6803)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Synechocystis sp. PCC 6803)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Synechocystis sp. PCC 6803)
- Iron stress-induced chlorophyll-binding protein (37 kDa, Protein from Synechocystis sp. PCC 6803)
- Water (18 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Synechocystis sp. PCC 6803)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Photosystem i reaction center subunit psak 1 (8 kDa, Protein from Synechocystis sp. PCC 6803)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i reaction center subunit iii (18 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Synechocystis sp. PCC 6803)
- Photosystem i reaction center subunit iv (8 kDa, Protein from Synechocystis sp. PCC 6803)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
LH2-LH3 antenna in anti parallel configuration embedded in a nanodisc
Resolution: 8.2 Å
EM Method: Single-particle
Fitted PDBs: 7tuw
Q-score: 0.18
Wang D, Fiebig OC, Harris D, Toporik H, Ji Y, Chuang C, Nairat M, Tong AL, Ogren JI, Hart SM, Cao J, Sturgis JN, Mazor Y, Schlau-Cohen GS
PNAS (2023) 120 pp. e2220477120-e2220477120 [ Pubmed: 37399405 DOI: doi:10.1073/pnas.2220477120 ]
- Light-harvesting protein b800-820 beta chain (5 kDa, Protein from Magnetospirillum molischianum)
- Bacteriochlorophyll a (911 Da, Ligand)
- Light-harvesting protein b-800/850 alpha chain (6 kDa, Protein from Magnetospirillum molischianum)
- Lh2 and lh3 antennae (Complex from Magnetospirillum molischianum)
- Lycopene (536 Da, Ligand)
- Light-harvesting protein b800-820 alpha chain (6 kDa, Protein from Magnetospirillum molischianum)
- Light-harvesting protein b-800/850 beta 1 chain (5 kDa, Protein from Magnetospirillum molischianum)
LH2-LH3 antenna in parallel configuration embedded in a nanodisc
Resolution: 11.4 Å
EM Method: Single-particle
Fitted PDBs: 7tv3
Q-score: 0.084
Wang D, Fiebig OC, Harris D, Toporik H, Ji Y, Chuang C, Nairat M, Tong AL, Ogren JI, Hart SM, Cao J, Sturgis JN, Mazor Y, Schlau-Cohen GS
PNAS (2023) 120 pp. e2220477120-e2220477120 [ Pubmed: 37399405 DOI: doi:10.1073/pnas.2220477120 ]
- Light-harvesting protein b800-820 beta chain (5 kDa, Protein from Magnetospirillum molischianum)
- Bacteriochlorophyll a (911 Da, Ligand)
- Light-harvesting protein b-800/850 alpha chain (6 kDa, Protein from Magnetospirillum molischianum)
- Lh2 and lh3 antennae (Complex from Magnetospirillum molischianum)
- Light-harvesting protein b-800/850 beta 1 chain (4 kDa, Protein from Magnetospirillum molischianum)
- Lycopene (536 Da, Ligand)
- Light-harvesting protein b800-820 alpha chain (6 kDa, Protein from Magnetospirillum molischianum)