Tribolium castaneum hexamerin 2
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7ze1
Q-score: 0.553
Hrebik D, Gondova M, Valentova L, Fuzik T, Pridal A, Novacek J, Plevka P
Acta Crystallogr D Struct Biol (2022) 78 pp. 1337-1346 [ DOI: doi:10.1107/S2059798322009299 Pubmed: 36322417 ]
- Larval serum protein 1 gamma chain-like protein (84 kDa, Protein from red flour beetle)
- Hexamerin 2 (520 kDa, Complex from Tribolium castaneum)
Tribolium castaneum hexamerin 2 from aggregated sample
Hrebik D, Gondova M, Valentova L, Fuzik T, Pridal A, Novacek J, Plevka P
Acta Crystallogr D Struct Biol (2022) 78 pp. 1337-1346 [ DOI: doi:10.1107/S2059798322009299 Pubmed: 36322417 ]
- Hexamerin 2 (520 kDa, Complex from Tribolium castaneum)
Structure of human 80S ribosome obtained from ssDNA coated grid
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7zfw
Q-score: 0.38
Hrebik D, Gondova M, Valentova L, Fuzik T, Pridal A, Novacek J, Plevka P
Acta Crystallogr D Struct Biol (2022) 78 pp. 1337-1346 [ DOI: doi:10.1107/S2059798322009299 Pubmed: 36322417 ]
- Rna (615-mer) (1 MDa, RNA from Homo sapiens)
- Human 80s ribosome (4 MDa, Complex from Homo sapiens)
Structure of human Apoferritin obtained from ssDNA coated grid
Resolution: 1.77 Å
EM Method: Single-particle
Fitted PDBs: 7zg7
Q-score: 0.846
Hrebik D, Gondova M, Valentova L, Fuzik T, Pridal A, Novacek J, Plevka P
Acta Crystallogr D Struct Biol (2022) 78 pp. 1337-1346 [ DOI: doi:10.1107/S2059798322009299 Pubmed: 36322417 ]
- Sodium ion (22 Da, Ligand)
- Water (18 Da, Ligand)
- Ferritin heavy chain (20 kDa, Protein from Homo sapiens)
- Human heavy chain apoferritin (20 kDa, Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
HIV-1 Env (BG505 SOSIP.664) in complex with the IgA bNAb 7-269 and the antibody 3BNC117.
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7pc2
Q-score: -0.058
Lorin V, Fernandez I, Masse-Ranson G, Bouvin-Pley M, Molinos-Albert LM, Planchais C, Hieu T, Pehau-Arnaudet G, Hrebik D, Girelli-Zubani G, Fiquet O, Guivel-Benhassine F, Sanders RW, Walker BD, Schwartz O, Scheid JF, Dimitrov JD, Plevka P, Braibant M, Seaman MS, Bontems F, Di Santo JP, Rey FA, Mouquet H
J Exp Med (2022) 219 [ DOI: doi:10.1084/jem.20212045 Pubmed: 35230385 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ternary complex of hiv env (bg505 sosip.664) with bnabs 3bnc117 (igg fab) and 7269 (iga fab) (Complex from Homo sapiens)
- 3bnc117 igg fab light chain (23 kDa, Protein from Homo sapiens)
- Gp120, bg505 sosip.664 t332n (54 kDa, Protein from Human immunodeficiency virus)
- 7-269 iga fab light chain (23 kDa, Protein from Homo sapiens)
- Gp41 bg505 t332n sosip.664 (17 kDa, Protein from Human immunodeficiency virus)
- 3bnc igg fab heavy chain (24 kDa, Protein from Homo sapiens)
- 7-269 iga fab heavy chain (26 kDa, Protein from Homo sapiens)
- Env protomer with one 3bnc117 fab and one 7-269 fab (Complex from Homo sapiens)
HIV-1 Env (BG505 SOSIP.664) in complex with the bNAb 7-176
Lorin V, Fernandez I, Masse-Ranson G, Bouvin-Pley M, Molinos-Albert LM, Planchais C, Hieu T, Pehau-Arnaudet G, Hrebik D, Girelli-Zubani G, Fiquet O, Guivel-Benhassine F, Sanders RW, Walker BD, Schwartz O, Scheid JF, Dimitrov JD, Plevka P, Braibant M, Seaman MS, Bontems F, Di Santo JP, Rey FA, Mouquet H
J Exp Med (2022) 219 [ DOI: doi:10.1084/jem.20212045 Pubmed: 35230385 ]
HIV-1 Env (BG505 SOSIP.664) in complex with the bNAb 7-155
Lorin V, Fernandez I, Masse-Ranson G, Bouvin-Pley M, Molinos-Albert LM, Planchais C, Hieu T, Pehau-Arnaudet G, Hrebik D, Girelli-Zubani G, Fiquet O, Guivel-Benhassine F, Sanders RW, Walker BD, Schwartz O, Scheid JF, Dimitrov JD, Plevka P, Braibant M, Seaman MS, Bontems F, Di Santo JP, Rey FA, Mouquet H
J Exp Med (2022) 219 [ DOI: doi:10.1084/jem.20212045 Pubmed: 35230385 ]
Capsid of empty GTA particle computed with C5 symmetry
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 6tsu
Q-score: 0.532
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ DOI: doi:10.1038/s41467-020-16669-9 Pubmed: 32541663 ]
- Rhodobacter capsulatus de442 gene transfer agent capsid (80 kDa, Complex from Rhodobacter capsulatus DE442)
- Uncharacterized protein (32 kDa, Protein from Rhodobacter capsulatus DE442)
- Head spike (Complex from Rhodobacter capsulatus DE442)
- Major capsid protein rcc01687 (40 kDa, Protein from Rhodobacter capsulatus DE442)
- Uncharacterized protein (9 kDa, Protein from Rhodobacter capsulatus DE442)
Structure of echovirus 18 in complex with neonatal Fc receptor
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7b5f
Q-score: 0.622
Buchta D, Levdansky Y, Fuzik T, Mukhamedova L, Moravcova J, Hrebik D, Andersen JT, Plevka P
To Be Published
- Igg receptor fcrn large subunit p51 (29 kDa, Protein from Homo sapiens)
- Beta-2-microglobulin (11 kDa, Protein from Homo sapiens)
- Echovirus 18 viral protein 4 (7 kDa, Protein from Echovirus E18)
- Echovirus 18 viral protein 2 (28 kDa, Protein from Echovirus E18)
- Guanine (151 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Echovirus 18 viral protein 1 (32 kDa, Protein from Echovirus E18)
- Heterodimer of neonatal fc receptor and beta-2-microglobulin (Complex from Homo sapiens)
- Structure of echovirus 18 in complex with neonatal fc receptor (2 MDa, Complex)
- Echovirus 18 viral protein 3 (26 kDa, Protein from Echovirus E18)
- Echovirus 18 native virion (Complex from Echovirus E18)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7bg6
Q-score: 0.631
Hrebik D, Fuzik T, Gondova M, Smerdova L, Adamopoulos A, Sedo O, Zdrahal Z, Plevka P
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2024251118 Pubmed: 33947819 ]
- Rna-octamer (5'-r(p*up*gp*up*up*up*up*up*a)-3') (2 kDa, RNA from Rhinovirus B14)
- Genome polyprotein (30 kDa, Protein from HRV-14)
- Water (18 Da, Ligand)
- Rhinovirus b14 (8 MDa, Virus from Rhinovirus B14)
- Genome polyprotein (26 kDa, Protein from HRV-14)
- Genome polyprotein (28 kDa, Protein from HRV-14)
- Genome polyprotein (7 kDa, Protein from HRV-14)