Extracellular architecture of an engineered canonical Wnt signaling ternary complex
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8ctg
Q-score: 0.109
Tsutsumi N, Hwang S, Waghray D, Hansen S, Jude KM, Wang N, Miao Y, Glassman CR, Caveney NA, Janda CY, Hannoush RN, Garcia KC
PNAS (2023) 120 pp. e2218238120-e2218238120 [ Pubmed: 36893265 DOI: doi:10.1073/pnas.2218238120 ]
- Low-density lipoprotein receptor-related protein 6 (Complex from Homo sapiens)
- Low-density lipoprotein receptor-related protein 6 (73 kDa, Protein from Homo sapiens)
- Protein wnt-8 (Complex from Xenopus laevis)
- Frizzled-8 (15 kDa, Protein from Mus musculus)
- Palmitoleic acid (254 Da, Ligand)
- Protein wnt-8 (36 kDa, Protein from Xenopus laevis)
- Haxwnt8-mfzd8crd-hlrp6e1e2 (130 kDa, Complex)
- Frizzled-8 (Complex from Mus musculus)
cryo-EM structure of HK022 putRNA-associated E.coli RNA polymerase elongation complex
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 7xue
Q-score: 0.476
Hwang S, Olinares PDB, Lee J, Kim J, Chait BT, King RA, Kang JY
Nat Commun (2022) 13 pp. 4668-4668 [ DOI: doi:10.1038/s41467-022-32315-y Pubmed: 35970830 ]
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli (strain K12))
- Template dna (54 kDa, DNA from Shamshuipovirus HK022)
- Zinc ion (65 Da, Ligand)
- Rna (nun gene and immunity region) (30 kDa, RNA from Shamshuipovirus HK022)
- Non-template dna (54 kDa, DNA from Shamshuipovirus HK022)
- Magnesium ion (24 Da, Ligand)
- Dna/rna (Complex)
- Dna-directed rna polymerase subunit beta' (158 kDa, Protein from Escherichia coli (strain K12))
- Rna polymerase (Complex from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli (strain K12))
- Hk022 putrna-associated e.coli rna polymerase elongation complex (440 kDa, Complex)
cryo-EM structure of HK022 putRNA-less E.coli RNA polymerase elongation complex
Resolution: 3.57 Å
EM Method: Single-particle
Fitted PDBs: 7xug
Q-score: 0.446
Hwang S, Olinares PDB, Lee J, Kim J, Chait BT, King RA, Kang JY
Nat Commun (2022) 13 pp. 4668-4668 [ DOI: doi:10.1038/s41467-022-32315-y Pubmed: 35970830 ]
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli (strain K12))
- Template dna (54 kDa, DNA from Shamshuipovirus HK022)
- E.coli rna polymerase (Complex from Escherichia coli (strain K12))
- Hk022 putrna-less e.coli rna polymerase elongation complex (440 kDa, Complex)
- Zinc ion (65 Da, Ligand)
- Rna (nun gene and immunity region) (30 kDa, RNA from Shamshuipovirus HK022)
- Non-template dna (54 kDa, DNA from Shamshuipovirus HK022)
- Magnesium ion (24 Da, Ligand)
- Dna/rna (Complex)
- Dna-directed rna polymerase subunit beta' (158 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli (strain K12))
Cryo-EM structure of sigma70 bound HK022 putRNA-associated E.coli RNA polymerase elongation complex
Resolution: 3.61 Å
EM Method: Single-particle
Fitted PDBs: 7xui
Q-score: 0.416
Hwang S, Olinares PDB, Lee J, Kim J, Chait BT, King RA, Kang JY
Nat Commun (2022) 13 pp. 4668-4668 [ DOI: doi:10.1038/s41467-022-32315-y Pubmed: 35970830 ]
- Sigma70 bound hk022 putrna-associated e.coli rna polymerase elongation complex (510 kDa, Complex)
- Dna-directed rna polymerase subunit beta' (158 kDa, Protein from Escherichia coli K-12)
- Rna polymerase sigma factor rpod (70 kDa, Protein from Escherichia coli K-12)
- Template dna (54 kDa, DNA from Shamshuipovirus HK022)
- Rna (122-mer) (39 kDa, RNA from Shamshuipovirus HK022)
- Zinc ion (65 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna/rna (Complex)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli K-12)
- Rna polymerase (Complex from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli K-12)
CryoEM structure of bovine cytochrome bc1 in complex with a tetrahydroquinolone inhibitor
McPhillie MJ, Zhou Y, Hickman MR, Gordon JA, Weber CR, Li Q, Lee PJ, Amporndanai K, Johnson RM, Darby H, Woods S, Li ZH, Priestley RS, Ristroph KD, Biering SB, El Bissati K, Hwang S, Hakim FE, Dovgin SM, Lykins JD, Roberts L, Hargrave K, Cong H, Sinai AP, Muench SP, Dubey JP, Prud'homme RK, Lorenzi HA, Biagini GA, Moreno SN, Roberts CW, Antonyuk SV, Fishwick CWG, McLeod R
Front Cell Infect Microbiol (2020) 10 pp. 203-203 [ DOI: doi:10.3389/fcimb.2020.00203 Pubmed: 32626661 ]
- Cytochrome bc1 (480 kDa, Complex from Bos taurus)