Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 8uk2
Q-score: 0.326
de Sautu M, Herrmann T, Scanavachi G, Jenni S, Harrison SC
PLoS Pathog (2024) 20 pp. e1011750-e1011750 [ DOI: doi:10.1371/journal.ppat.1011750 Pubmed: 38574119 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Outer capsid protein vp4 (86 kDa, Protein from Simian rotavirus A strain RRV)
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Simian rotavirus A strain RRV)
- Simian rotavirus a strain rrv (Virus from Simian rotavirus A strain RRV)
- Calcium ion (40 Da, Ligand)
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 8uk3
Q-score: 0.327
de Sautu M, Herrmann T, Scanavachi G, Jenni S, Harrison SC
PLoS Pathog (2024) 20 pp. e1011750-e1011750 [ DOI: doi:10.1371/journal.ppat.1011750 Pubmed: 38574119 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Simian rotavirus a strain rrv (Virus from Simian rotavirus A strain RRV)
- Outer capsid protein vp4 (86 kDa, Protein from Simian rotavirus A strain RRV)
- Calcium ion (40 Da, Ligand)
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Simian rotavirus A strain RRV)
Autographa californica multiple nucleopolyhedrovirus VP39
Resolution: 3.2 Å
EM Method: Helical reconstruction
Fitted PDBs: 8taf
Q-score: 0.534
Benning FMC, Jenni S, Garcia CY, Nguyen TH, Zhang X, Chao LH
Nat Commun (2024) 15 pp. 250-250 [ Pubmed: 38177118 DOI: doi:10.1038/s41467-023-44596-y ]
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ums
Q-score: 0.493
Jenni S, Li Z, Wang Y, Bessey T, Salgado EN, Schmidt AG, Greenberg HB, Jiang B, Harrison SC
J Virol (2022) 96 pp. e0062722-e0062722 [ DOI: doi:10.1128/jvi.00627-22 Pubmed: 35924923 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Outer capsid protein vp8* (26 kDa, Protein from Rotavirus)
- Intermediate capsid protein vp6 (44 kDa, Protein from Rotavirus)
- Rotavirus (Virus from Rotavirus)
- Fab 41 light chain (23 kDa, Protein from Homo sapiens)
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Rotavirus)
- Rotavirus with fab bound (Complex)
- Outer capsid protein vp5* (59 kDa, Protein from Rotavirus)
- Fab 41 heavy chain (25 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Fab 41 (Complex from Homo sapiens)
Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 - Reversed conformation
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7umt
Q-score: 0.52
Jenni S, Li Z, Wang Y, Bessey T, Salgado EN, Schmidt AG, Greenberg HB, Jiang B, Harrison SC
J Virol (2022) 96 pp. e0062722-e0062722 [ Pubmed: 35924923 DOI: doi:10.1128/jvi.00627-22 ]
- Intermediate capsid protein vp6 (44 kDa, Protein from Rotavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Rotavirus)
- Rotavirus (Virus from Rotavirus)
- Outer capsid protein vp5* (59 kDa, Protein from Rotavirus)
- Calcium ion (40 Da, Ligand)
Structure of vesicular stomatitis virus (helical reconstruction, 4.1 A resolution)
Resolution: 4.1 Å
EM Method: Helical reconstruction
Fitted PDBs: 7umk
Q-score: 0.311
Jenni S, Horwitz JA, Bloyet LM, Whelan SPJ, Harrison SC
Nat Commun (2022) 13 pp. 4802-4802 [ DOI: doi:10.1038/s41467-022-32223-1 Pubmed: 35970826 ]
- Nucleoprotein (47 kDa, Protein from Vesicular stomatitis Indiana virus)
- Rna (5'-r(p*up*up*up*up*up*up*up*up*u)-3') (2 kDa, RNA from Vesicular stomatitis Indiana virus)
- Matrix protein (26 kDa, Protein from Vesicular stomatitis Indiana virus)
- Vesicular stomatitis indiana virus (Virus from Vesicular stomatitis Indiana virus)
Structure of vesicular stomatitis virus (local reconstruction, 3.5 A resolution)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7uml
Q-score: 0.399
Jenni S, Horwitz JA, Bloyet LM, Whelan SPJ, Harrison SC
Nat Commun (2022) 13 pp. 4802-4802 [ DOI: doi:10.1038/s41467-022-32223-1 Pubmed: 35970826 ]
- Nucleoprotein (47 kDa, Protein from Vesicular stomatitis Indiana virus)
- Rna (5'-r(p*up*up*up*up*up*up*up*up*up*up*up*up*u)-3') (3 kDa, RNA from Vesicular stomatitis Indiana virus)
- Matrix protein (26 kDa, Protein from Vesicular stomatitis Indiana virus)
- Vesicular stomatitis indiana virus (Virus from Vesicular stomatitis Indiana virus)
SARS-CoV-2 Spike (2P) in complex with C12C11 Fab
Tong P, Gautam A, Windsor IW, Travers M, Chen Y, Garcia N, Whiteman NB, McKay LGA, Storm N, Malsick LE, Honko AN, Lelis FJN, Habibi S, Jenni S, Cai Y, Rennick LJ, Duprex WP, McCarthy KR, Lavine CL, Zuo T, Lin J, Zuiani A, Feldman J, MacDonald EA, Hauser BM, Griffths A, Seaman MS, Schmidt AG, Chen B, Neuberg D, Bajic G, Harrison SC, Wesemann DR
Cell (2021) 184 pp. 4969-4980.e15 [ Pubmed: 34332650 DOI: doi:10.1016/j.cell.2021.07.025 ]
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Upright conformation
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6wxe
Q-score: 0.472
Herrmann T, Torres R, Salgado EN, Berciu C, Stoddard D, Nicastro D, Jenni S, Harrison SC
Nature (2021) 590 pp. 666-670 [ DOI: doi:10.1038/s41586-020-03124-4 Pubmed: 33442061 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rotavirus vp4, vp6, vp7 assembly in the spike conformation (1 MDa, Complex from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Outer capsid protein vp4 (86 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Calcium ion (40 Da, Ligand)
- Intermediate capsid protein vp6 (44 kDa, Protein from RV-A)
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 6wxf
Q-score: 0.306
Herrmann T, Torres R, Salgado EN, Berciu C, Stoddard D, Nicastro D, Jenni S, Harrison SC
Nature (2021) 590 pp. 666-670 [ DOI: doi:10.1038/s41586-020-03124-4 Pubmed: 33442061 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rotavirus vp4, vp6, vp7 assembly in an intermediate confromattion (1 MDa, Complex from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Calcium ion (40 Da, Ligand)
- Intermediate capsid protein vp6 (44 kDa, Protein from RV-A)
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Outer capsid protein vp4 (86 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))