Electron Microscopy Data Bank

EMPIAR-11810

Related EMDB

Graphene-sandwiched spike

Release date: June 12, 2024
Dataset size: 1.5 TB
Experiment type: EMDB

Xu J, Gao X, Zheng L, Jia X, Xu K, Ma Y, Wei X, Liu N, Peng H, Wang HW

Proc Natl Acad Sci U S A (2024) 121 [ Pubmed: 38252835 DOI: 10.1073/pnas.2309384121 ]

Image sets:

Unaligned multi-frame micrographs of graphene-sandwiched spike

EMD-37156

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Graphene sandwiched equine spleen apoferritin

Release date: Jan. 17, 2024
Resolution: 3.1 Å
EM Method: Single-particle

Xu J, Gao X, Zheng L, Jia X, Xu K, Ma Y, Wei X, Liu N, Peng H, Wang HW

PNAS (2024) 121 pp. e2309384121-e2309384121 [ DOI: doi:10.1073/pnas.2309384121 Pubmed: 38252835 ]

Sample:

Equine spleen apoferritin (Complex from Equus caballus)

EMD-37158

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Graphene sandwiched 20S proteasome

Release date: Jan. 17, 2024
Resolution: 2.6 Å
EM Method: Single-particle

Xu J, Gao X, Zheng L, Jia X, Xu K, Ma Y, Wei X, Liu N, Peng H, Wang HW

PNAS (2024) 121 pp. e2309384121-e2309384121 [ DOI: doi:10.1073/pnas.2309384121 Pubmed: 38252835 ]

Sample:

20s proteasome (Complex from Thermoplasma acidophilum)

EMD-38213

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Graphene sandwiched spike

Release date: Jan. 17, 2024
Resolution: 2.5 Å
EM Method: Single-particle

Xu J, Gao X, Zheng L, Jia X, Xu K, Ma Y, Wei X, Liu N, Peng H, Wang HW

PNAS (2024) 121 pp. e2309384121-e2309384121 [ DOI: doi:10.1073/pnas.2309384121 Pubmed: 38252835 ]

Sample:

Spike of sars-cov-2 (Complex from Severe acute respiratory syndrome coronavirus 2)

EMD-35245

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Cryo-EM structure of the major capsid protein VP39 of Autographa californica multiple nucleopolyhedrovirus (AcMNPV)

Release date: Dec. 13, 2023
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 8i8a
Q-score: 0.402

Jia X, Gao Y, Huang Y, Sun L, Li S, Li H, Zhang X, Li Y, He J, Wu W, Venkannagari H, Yang K, Baker ML, Zhang Q

Nat Commun (2023) 14 pp. 7481-7481 [ Pubmed: 37980340 DOI: doi:10.1038/s41467-023-43284-1 ]

Sample:

EMD-35246

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Outer shell and inner layer structures of Autographa californica multiple nucleopolyhedrovirus (AcMNPV)

Release date: Dec. 13, 2023
Resolution: 4.31 Å
EM Method: Single-particle
Fitted PDBs: 8i8b
Q-score: 0.293

Jia X, Gao Y, Huang Y, Sun L, Li S, Li H, Zhang X, Li Y, He J, Wu W, Venkannagari H, Yang K, Baker ML, Zhang Q

Nat Commun (2023) 14 pp. 7481-7481 [ Pubmed: 37980340 DOI: doi:10.1038/s41467-023-43284-1 ]

Sample:

Major viral capsid protein (38 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
Autographa californica multiple nucleopolyhedrovirus (Virus from Autographa californica multiple nucleopolyhedrovirus)
Early 49 daa protein (55 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
Acorf-109 peptide (44 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
P40 (41 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
38k (38 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
Viral capsid associated protein (79 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
Occlusion-derived virus envelope/capsid protein (33 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)

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EMD-35247

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Plug structure of the Autographa californica multiple nucleopolyhedrovirus (AcMNPV)

Release date: Dec. 13, 2023
Resolution: 4.93 Å
EM Method: Single-particle
Fitted PDBs: 8i8c
Q-score: 0.173

Jia X, Gao Y, Huang Y, Sun L, Li S, Li H, Zhang X, Li Y, He J, Wu W, Venkannagari H, Yang K, Baker ML, Zhang Q

Nat Commun (2023) 14 pp. 7481-7481 [ Pubmed: 37980340 DOI: doi:10.1038/s41467-023-43284-1 ]

Sample:

EMD-35242

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The helical cylinder of Autographa californica multiple nucleopolyhedrovirus (AcMNPV) nucleocapsid

Release date: Nov. 29, 2023
Resolution: 3.9 Å
EM Method: Helical reconstruction

Jia X, Gao Y, Huang Y, Sun L, Li S, Li H, Zhang X, Li Y, He J, Wu W, Venkannagari H, Yang K, Baker ML, Zhang Q

Nat Commun (2023) 14 pp. 7481-7481 [ Pubmed: 37980340 DOI: doi:10.1038/s41467-023-43284-1 ]

Sample:

EMD-35243

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The apical part of Autographa californica multiple nucleopolyhedrovirus (AcMNPV)

Release date: Nov. 29, 2023
Resolution: 7.41 Å
EM Method: Single-particle

Jia X, Gao Y, Huang Y, Sun L, Li S, Li H, Zhang X, Li Y, He J, Wu W, Venkannagari H, Yang K, Baker ML, Zhang Q

Nat Commun (2023) 14 pp. 7481-7481 [ Pubmed: 37980340 DOI: doi:10.1038/s41467-023-43284-1 ]

Sample:

Autographa californica multiple nucleopolyhedrovirus (Virus from Autographa californica multiple nucleopolyhedrovirus)

EMD-35244

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The basal body of Autographa californica multiple nucleopolyhedrovirus (AcMNPV)

Release date: Nov. 29, 2023
Resolution: 6.82 Å
EM Method: Single-particle

Jia X, Gao Y, Huang Y, Sun L, Li S, Li H, Zhang X, Li Y, He J, Wu W, Venkannagari H, Yang K, Baker ML, Zhang Q

Nat Commun (2023) 14 pp. 7481-7481 [ Pubmed: 37980340 DOI: doi:10.1038/s41467-023-43284-1 ]

Sample:

Autographa californica multiple nucleopolyhedrovirus (Virus from Autographa californica multiple nucleopolyhedrovirus)

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