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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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primary_citation_author:"Jin H" AND author_name:"Zeng F"

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EMD-24652

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Structure of ribosomal complex bound with Rbg1/Tma46

Release date: Nov. 10, 2021
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 7rr5
Q-score: 0.437

Zeng F, Li X, Pires-Alves M, Chen X, Hawk CW, Jin H

Cell Rep (2021) 37 pp. 109877-109877 [ Pubmed: 34706231 DOI: doi:10.1016/j.celrep.2021.109877 ]

Sample:

Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Baker's yeast)
60s ribosomal protein l21-a (18 kDa, Protein from Baker's yeast)
A-trna (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l39 (6 kDa, Protein from Baker's yeast)
40s ribosomal protein s13 (17 kDa, Protein from Baker's yeast)
Rps15 isoform 1 (16 kDa, Protein from Baker's yeast)
60s ribosomal protein l42-a (12 kDa, Protein from Baker's yeast)
60s ribosomal protein l2-b (27 kDa, Protein from Baker's yeast)
Rps22a isoform 1 (14 kDa, Protein from Baker's yeast)
Rpp0 isoform 1 (33 kDa, Protein from Baker's yeast)
Rpl12a isoform 1 (17 kDa, Protein from Baker's yeast)
Rps25a isoform 1 (12 kDa, Protein from Baker's yeast)
5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l14-a (15 kDa, Protein from Baker's yeast)
Rps2 isoform 1 (27 kDa, Protein from Baker's yeast)
Rbg1/tma46 (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l25 (15 kDa, Protein from Baker's yeast)
40s ribosomal protein s27-a (8 kDa, Protein from Baker's yeast)
60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
5s rrna (38 kDa, RNA from Saccharomyces cerevisiae)
Eif5a (Complex from Saccharomyces cerevisiae)
Rps26b isoform 1 (13 kDa, Protein from Baker's yeast)
60s ribosomal protein l34-a (13 kDa, Protein from Baker's yeast)
40s ribosomal protein s17-a (15 kDa, Protein from Baker's yeast)
60s ribosomal protein l23-b (14 kDa, Protein from Baker's yeast)
Aspartic acid (133 Da, Ligand)
Rpl3 isoform 1 (43 kDa, Protein from Baker's yeast)
60s ribosomal protein l28 (16 kDa, Protein from Baker's yeast)
60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
40s ribosomal protein s0 (28 kDa, Protein from Baker's yeast)
60s ribosomal protein l22-a (13 kDa, Protein from Baker's yeast)
60s subunit (Complex from Saccharomyces cerevisiae)
Rps8a isoform 1 (22 kDa, Protein from Baker's yeast)
60s ribosomal protein l43-a (10 kDa, Protein from Baker's yeast)
40s ribosomal protein s4 (29 kDa, Protein from Baker's yeast)
60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
Rpl10 isoform 1 (25 kDa, Protein from Baker's yeast)
40s ribosomal protein s12 (15 kDa, Protein from Baker's yeast)
60s ribosomal protein l1 (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
Rps3 isoform 1 (26 kDa, Protein from Baker's yeast)
40s ribosomal protein s30 (7 kDa, Protein from Baker's yeast)
40s ribosomal protein s16-a (15 kDa, Protein from Baker's yeast)
40s ribosomal protein s18-b (17 kDa, Protein from Baker's yeast)
Mrna (Complex from Saccharomyces cerevisiae)
Rpl24a isoform 1 (17 kDa, Protein from Baker's yeast)
60s ribosomal protein l19-a (21 kDa, Protein from Baker's yeast)
60s ribosomal protein l6 (20 kDa, Protein from Baker's yeast)
Translation machinery-associated protein 46 (39 kDa, Protein from Baker's yeast)
40s ribosomal protein s11-b (17 kDa, Protein from Baker's yeast)
Eukaryotic translation initiation factor 5a (17 kDa, Protein from Baker's yeast)
40s ribosomal protein s14-b (14 kDa, Protein from Baker's yeast)
40s ribosomal protein s23 (16 kDa, Protein from Baker's yeast)
Rpl4a isoform 1 (39 kDa, Protein from Baker's yeast)
Rps20 isoform 1 (13 kDa, Protein from Baker's yeast)
40s ribosomal protein s21-a (9 kDa, Protein from Baker's yeast)
Ribosomal protein l37 (9 kDa, Protein from Baker's yeast)
18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
Rpl5 isoform 1 (33 kDa, Protein from Baker's yeast)
60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
Mrna (5 kDa, RNA from Saccharomyces cerevisiae)
A-trna (24 kDa, RNA from Saccharomyces cerevisiae)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Baker's yeast)
60s ribosomal protein l13 (22 kDa, Protein from Baker's yeast)
Magnesium ion (24 Da, Ligand)
Rps5p (25 kDa, Protein from Baker's yeast)
60s ribosomal protein l27 (15 kDa, Protein from Baker's yeast)
60s ribosomal protein l18-b (20 kDa, Protein from Baker's yeast)
60s ribosomal protein l8-a (28 kDa, Protein from Baker's yeast)
40s subunit (Complex from Saccharomyces cerevisiae)
Rpl29 isoform 1 (6 kDa, Protein from Baker's yeast)
Rpl11b isoform 1 (19 kDa, Protein from Baker's yeast)
P-trna (Complex from Saccharomyces cerevisiae)
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
Rpl38 isoform 1 (8 kDa, Protein from Baker's yeast)
60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
Rpl32 isoform 1 (14 kDa, Protein from Baker's yeast)
60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
60s ribosomal protein l31-a (12 kDa, Protein from Baker's yeast)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Baker's yeast)
Ribosomal complex with rbg1/tma46 (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l7-a (27 kDa, Protein from Baker's yeast)
Ribosome-interacting gtpase 1 (45 kDa, Protein from Saccharomyces cerevisiae)
Zinc ion (65 Da, Ligand)
P-trna (24 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s9-a (22 kDa, Protein from Baker's yeast)
40s ribosomal protein s6 (27 kDa, Protein from Baker's yeast)
Rps1a isoform 1 (28 kDa, Protein from Baker's yeast)
60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
60s ribosomal protein l30 (11 kDa, Protein from Baker's yeast)
Rps29a isoform 1 (6 kDa, Protein from Baker's yeast)
60s ribosomal protein l41-a (3 kDa, Protein from Baker's yeast)
40s ribosomal protein s24 (15 kDa, Protein from Baker's yeast)
40s ribosomal protein s10-a (12 kDa, Protein from Baker's yeast)
Rps28a isoform 1 (7 kDa, Protein from Baker's yeast)
40s ribosomal protein s7 (21 kDa, Protein from Baker's yeast)
40s ribosomal protein s19-a (15 kDa, Protein from Baker's yeast)
60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)

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EMD-7340

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Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)

Release date: Feb. 21, 2018
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6c4h
Q-score: 0.529

Sci Rep (2018) 8 pp. 2349-2349 [ DOI: doi:10.1038/s41598-018-20107-8 Pubmed: 29403017 ]

Sample:

50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (Cellular component from Escherichia coli)
50s ribosomal protein l2 (Cellular component from Escherichia coli)
P-site trna fmet (Cellular component from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
23s rrna (Cellular component from Escherichia coli)
Peptide chain release factor 2 (Cellular component from Escherichia coli)
50s subunit (Complex from Escherichia coli)
50s ribosomal protein l16 (Cellular component from Escherichia coli)
P-site trna fmet (24 kDa, RNA from Escherichia coli)
Peptide chain release factor rf2 (43 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
23s rrna (941 kDa, RNA from Escherichia coli)
Nonstop ribosomal complex with arfa/rf2 (Complex)
50s ribosomal protein l3 (Cellular component from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)

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EMD-7341

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Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Release date: Feb. 21, 2018
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 6c4i
Q-score: 0.432

Sci Rep (2018) 8 pp. 2349-2349 [ DOI: doi:10.1038/s41598-018-20107-8 Pubmed: 29403017 ]

Sample:

50s ribosomal protein l35 (Cellular component from Escherichia coli)
30s ribosomal protein s6 (Cellular component from Escherichia coli)
50s ribosomal protein l3 (Cellular component from Escherichia coli)
30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (Cellular component from Escherichia coli)
50s ribosomal protein l28 (Cellular component from Escherichia coli)
30s ribosomal protein s14 (Cellular component from Escherichia coli)
30s ribosomal proteins (Complex from Escherichia coli)
50s ribosomal protein l11 (Cellular component from Escherichia coli)
E-site or p-site trna fmet (24 kDa, RNA from Escherichia coli)
E-site or p-site trna fmet (Cellular component from Escherichia coli)
30s ribosomal protein s3 (Cellular component from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (Cellular component from Escherichia coli)
50s ribosomal protein l34 (Cellular component from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
30s ribosomal protein s12 (Cellular component from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
30s ribosomal protein s16 (Cellular component from Escherichia coli)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (Cellular component from Escherichia coli)
50s ribosomal protein l4 (Cellular component from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (Cellular component from Escherichia coli)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s9 (Cellular component from Escherichia coli)
5s rrna (Cellular component from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (Cellular component from Escherichia coli)
23s rrna (941 kDa, RNA from Escherichia coli)
Peptide chain release factor 2 (Cellular component from Escherichia coli)
50s ribosomal protein l9 (Cellular component from Escherichia coli)
50s ribosomal protein l25 (Cellular component from Escherichia coli)
Alternative ribosome-rescue factor a (Cellular component from Escherichia coli)
16s rrna (497 kDa, RNA from Escherichia coli)
50s ribosomal protein l18 (Cellular component from Escherichia coli)
50s ribosomal protein l15 (Cellular component from Escherichia coli)
16s rrna (Cellular component from Escherichia coli)
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
Peptide chain release factor 2 (43 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (Cellular component from Escherichia coli)
50s ribosomal protein l31 (Cellular component from Escherichia coli)
30s ribosomal protein s2 (Cellular component from Escherichia coli)
30s ribosomal protein s7 (Cellular component from Escherichia coli)
50s ribosomal protein l20 (Cellular component from Escherichia coli)
30s ribosomal protein s5 (Cellular component from Escherichia coli)
30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
50s ribosomal protein l10 (Cellular component from Escherichia coli)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
5s rrna (38 kDa, RNA from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
30s ribosomal protein s18 (Cellular component from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (Cellular component from Escherichia coli)
30s ribosomal protein s15 (Cellular component from Escherichia coli)
50s ribosomal protein l17 (Cellular component from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s21 (Cellular component from Escherichia coli)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (Cellular component from Escherichia coli)
30s subunit (Complex from Escherichia coli)
50s ribosomal protein l24 (Cellular component from Escherichia coli)
30s ribosomal protein s11 (Cellular component from Escherichia coli)
50s ribosomal protein l33 (Cellular component from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l29 (Cellular component from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
Water (18 Da, Ligand)
50s ribosomal protein l13 (Cellular component from Escherichia coli)
Alternative ribosome-rescue factor a (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
Mrna (5 kDa, RNA from Escherichia coli)
50s ribosomal protein l14 (Cellular component from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (Cellular component from Escherichia coli)
30s ribosomal protein s17 (Cellular component from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
30s ribosomal protein s4 (Cellular component from Escherichia coli)
50s ribosomal protein l27 (Cellular component from Escherichia coli)
30s ribosomal protein s8 (Cellular component from Escherichia coli)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
50s subunit (Complex from Escherichia coli)
23s rrna (Cellular component from Escherichia coli)
30s ribosomal protein s10 (Cellular component from Escherichia coli)
50s ribosomal protein l16 (Cellular component from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l2 (Cellular component from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
50s ribosomal proteins (Complex from Escherichia coli)
50s ribosomal protein l32 (Cellular component from Escherichia coli)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s20 (Cellular component from Escherichia coli)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
Nonstop mrna (Cellular component from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
Nonstop ribosomal complex with arfa/rf2 (Complex)
50s ribosomal protein l5 (Cellular component from Escherichia coli)
50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)

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EMD-8505

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Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Release date: Jan. 11, 2017
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 5u4i
Q-score: 0.226

Zeng F, Chen Y, Remis J, Shekhar M, Phillips JC, Tajkhorshid E, Jin H

Nature (2017) 541 pp. 554-557 [ DOI: doi:10.1038/nature21053 Pubmed: 28077875 ]

Sample:

50s ribosomal protein l35 (Cellular component from Escherichia coli)
30s ribosomal protein s6 (Cellular component from Escherichia coli)
50s ribosomal protein l3 (Cellular component from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (Cellular component from Escherichia coli)
30s ribosomal protein s14 (Cellular component from Escherichia coli)
50s ribosomal protein l28 (Cellular component from Escherichia coli)
50s ribosomal protein l11 (Cellular component from Escherichia coli)
30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s3 (Cellular component from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli (strain K12))
Alternative ribosome-rescue factor a (6 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l22 (Cellular component from Escherichia coli)
50s ribosomal protein l34 (Cellular component from Escherichia coli)
30s ribosomal protein s12 (Cellular component from Escherichia coli)
30s ribosomal protein s16 (Cellular component from Escherichia coli)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s13 (Cellular component from Escherichia coli)
50s ribosomal protein l4 (Cellular component from Escherichia coli)
16s rrna (497 kDa, RNA from Escherichia coli)
50s ribosomal protein l36 (Cellular component from Escherichia coli)
30s ribosomal protein s9 (Cellular component from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli (strain K12))
Peptide chain release factor 2 (43 kDa, Protein from Escherichia coli (strain K12))
5s rrna (Cellular component from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l30 (Cellular component from Escherichia coli)
50s ribosomal protein l9 (Cellular component from Escherichia coli)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (Cellular component from Escherichia coli)
50s ribosomal protein l15 (Cellular component from Escherichia coli)
16s rrna (Cellular component from Escherichia coli)
50s ribosomal protein l25 (Complex from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (Complex from Escherichia coli)
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
Peptide chain release factor 2 (40 MDa, Cellular component from Escherichia coli)
50s ribosomal protein l21 (Cellular component from Escherichia coli)
30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (Cellular component from Escherichia coli)
50s ribosomal protein l20 (Cellular component from Escherichia coli)
30s ribosomal protein s5 (Cellular component from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli (strain K12))
30s subunit (Complex)
30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s18 (Cellular component from Escherichia coli)
50s subunit (Complex)
30s ribosomal protein s15 (Cellular component from Escherichia coli)
50s ribosomal protein l23 (Cellular component from Escherichia coli)
50s ribosomal protein l17 (Cellular component from Escherichia coli)
30s ribosomal protein s21 (Cellular component from Escherichia coli)
P-site or e-site fmet-trna(fmet) (Cellular component)
Mrna (Cellular component)
50s ribosomal protein l19 (Cellular component from Escherichia coli)
30s ribosomal protein s11 (Cellular component from Escherichia coli)
50s ribosomal protein l24 (Cellular component from Escherichia coli)
5s rrna (38 kDa, RNA from Escherichia coli)
30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli (strain K12))
Alternative ribosome-rescue factor a (6 MDa, Cellular component from Escherichia coli)
50s ribosomal protein l33 (Cellular component from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l29 (Cellular component from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli (strain K12))
P-site or e-site fmet-trna(fmet) (24 kDa, RNA from Escherichia coli)
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l13 (Cellular component from Escherichia coli)
Mrna (5 kDa, RNA from Escherichia coli)
50s ribosomal protein l14 (Cellular component from Escherichia coli)
Non-stop ribosomal complex with arfa and rf2 (Complex from Escherichia coli)
50s ribosomal protein l6 (Cellular component from Escherichia coli)
30s ribosomal protein s17 (Cellular component from Escherichia coli)
30s ribosomal protein s4 (Cellular component from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l27 (Cellular component from Escherichia coli)
30s ribosomal protein s8 (Cellular component from Escherichia coli)
30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s10 (Cellular component from Escherichia coli)
23s rrna (Cellular component from Escherichia coli)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l16 (Cellular component from Escherichia coli)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l2 (Cellular component from Escherichia coli)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (Cellular component from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s20 (Cellular component from Escherichia coli)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
23s rrna (941 kDa, RNA from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (Cellular component from Escherichia coli)

[Show more]

EMD-8506

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Structural Basis of Co-translational Quality Control by ArfA and RF2 Binding to Ribosome

Release date: Jan. 11, 2017
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 5u4j
Q-score: 0.402

Zeng F, Chen Y, Remis J, Shekhar M, Phillips JC, Tajkhorshid E, Jin H

Nature (2017) 541 pp. 554-557 [ DOI: doi:10.1038/nature21053 Pubmed: 28077875 ]

Sample:

30s ribosomal protein s4 (Cellular component from Escherichia coli)
Alternative ribosome-rescue factor a (Cellular component from Escherichia coli)
P-site trna fmet (24 kDa, RNA from Escherichia coli)
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
50s subunit (Complex from Escherichia coli)
16s rrna (Cellular component from Escherichia coli)
23s rrna (Cellular component from Escherichia coli)
30s ribosomal protein s3 (Cellular component from Escherichia coli)
Peptide chain release factor 2 (Cellular component from Escherichia coli)
Mrna (Cellular component)
30s subunit (Complex from Escherichia coli)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
Alternative ribosome-rescue factor a (6 kDa, Protein from Escherichia coli)
30s ribosomal protein s12 (Cellular component from Escherichia coli)
16s rrna (497 kDa, RNA from Escherichia coli)
23s rrna (941 kDa, RNA from Escherichia coli)
30s ribosomal protein s5 (Cellular component from Escherichia coli)
30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
Peptide chain release factor 2 (43 kDa, Protein from Escherichia coli)
Mrna (5 kDa, RNA from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
Non-stop ribosomal complex with arfa and rf2 (Complex from Escherichia coli)
P-site trna fmet (Cellular component from Escherichia coli)

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EMDB [5]

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