Electron Microscopy Data Bank

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Release date: Jan. 31, 2024
Resolution: 4.02 Å
EM Method: Single-particle
Fitted PDBs: 8gn5
Q-score: 0.45

Kim KJ, Kim G, Bae JH, Song JJ, Kim HS

Adv Healthc Mater (2024) 13 pp. e2302656-e2302656 [ DOI: doi:10.1002/adhm.202302656 Pubmed: 37966427 ]

Sample:

Lederbergvirus (Virus from Lederbergvirus)
Major capsid protein (46 kDa, Protein from Lederbergvirus)

EMD-34350

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Legionella pneumophila Deubiquitinase, LotA(7-544) apo state

Release date: April 26, 2023
Resolution: 15.0 Å
EM Method: Single-particle

Kang S, Kim G, Choi M, Jeong M, van der Heden van Noort GJ, Roh SH, Shin D

Life Sci Alliance (2023) 6 [ Pubmed: 37100438 DOI: doi:10.26508/lsa.202201876 ]

Sample:

Deubiquitinase of lota 7-544 apo state (Cellular component from Legionella pneumophila)

EMD-0965

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AAA+ ATPase, ClpL from Streptococcus pneumoniae - ATP bound

Release date: Jan. 27, 2021
Resolution: 6.33 Å
EM Method: Single-particle
Fitted PDBs: 6lsy
Q-score: 0.152

Kim G, Lee SG, Han S, Jung J, Jeong HS, Hyun JK, Rhee DK, Kim HM, Lee S

FASEB J (2020) 34 pp. 14353-14370 [ DOI: doi:10.1096/fj.202000843R Pubmed: 32910525 ]

Sample:

Atp-dependent clp protease, atp-binding subunit (77 kDa, Protein from Streptococcus pneumoniae)
Clpl trap(e193a/e526a):atp-bound (1 MDa, Cellular component from Streptococcus pneumoniae)

EMD-0967

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AAA+ ATPase, ClpL from Streptococcus pneumoniae: ATPrS-bound

Release date: Jan. 27, 2021
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6lt4
Q-score: 0.227

Kim G, Lee SG, Han S, Jung J, Jeong HS, Hyun JK, Rhee DK, Kim HM, Lee S

FASEB J (2020) 34 pp. 14353-14370 [ DOI: doi:10.1096/fj.202000843R Pubmed: 32910525 ]

Sample:

Magnesium ion (24 Da, Ligand)
Atp-dependent clp protease, atp-binding subunit (77 kDa, Protein from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466))
Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
Aaa+ atpase, chaperone (1 MDa, Cellular component from Streptococcus pneumoniae)

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EMD-30625

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Vibrio cholera aldehyde-alcohol dehrogenase

Release date: Dec. 30, 2020
Resolution: 4.37 Å
EM Method: Single-particle
Fitted PDBs: 7dag
Q-score: 0.197

Cho S, Kim G, Song JJ, Cho C

Biochem Biophys Res Commun (2020) 536 pp. 38-44 [ DOI: doi:10.1016/j.bbrc.2020.12.040 Pubmed: 33360541 ]

Sample:

Aldehyde-alcohol dehydrogenase (96 kDa, Protein from Vibrio cholerae)
Aldehyde-alcohol dehydrogenase spirosome (Complex from Vibrio cholerae)

EMD-30220

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AdhE spirosome in extended conformation

Release date: June 24, 2020
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 7bvp
Q-score: 0.469

Kim G, Yang J, Jang J, Choi JS, Roe AJ, Byron O, Seok C, Song JJ

Commun Biol (2020) 3 pp. 298-298 [ Pubmed: 32523125 DOI: doi:10.1038/s42003-020-1030-1 ]

Sample:

Zinc ion (65 Da, Ligand)
Aldehyde-alcohol dehydrogenase (96 kDa, Protein from Escherichia coli (strain K12))
Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Adhe spirosome in extended conformation (96 MDa, Complex from Escherichia coli)

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EMD-9623

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Cryo-EM structure of aldehyde-alcohol dehydrogenase reveals a high-order helical architecture critical for its activity

Release date: Aug. 21, 2019
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 6ahc
Q-score: 0.428

Kim G, Azmi L, Jang S, Jung T, Hebert H, Roe AJ, Byron O, Song JJ

Nat Commun (2019) 10 pp. 4527-4527 [ DOI: doi:10.1038/s41467-019-12427-8 Pubmed: 31586059 ]

Sample:

Aldehyde-alcohol dehydrogenase (96 kDa, Protein from Escherichia coli K-12)
Helical structure of adhe (Complex from Escherichia coli)

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