Cryo-EM structure of Natrinema sp. J7-2 Type IV pilus
Resolution: 3.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 8gi2
Q-score: 0.543
Kreutzberger MAB, Cvirkaite-Krupovic V, Liu Y, Baquero DP, Liu J, Sonani RR, Calladine CR, Wang F, Krupovic M, Egelman EH
PNAS (2023) 120 pp. e2304256120-e2304256120 [ DOI: doi:10.1073/pnas.2304256120 Pubmed: 37399404 ]
- Natrinema pilin, orf10 (17 kDa, Protein from Natrinema sp. J7-2)
- Type iv pili (Complex from Natrinema sp. J7-2)
Structure of the Haloferax volcanii archaeal type IV pilus
Resolution: 2.9 Å
EM Method: Helical reconstruction
Fitted PDBs: 8fj5
Q-score: 0.612
Kreutzberger MAB, Cvirkaite-Krupovic V, Liu Y, Baquero DP, Liu J, Sonani RR, Calladine CR, Wang F, Krupovic M, Egelman EH
PNAS (2023) 120 pp. e2304256120-e2304256120 [ Pubmed: 37399404 DOI: doi:10.1073/pnas.2304256120 ]
Structure of the Saccharolobus solfataricus archaeal type IV pilus at 3 Angstrom resolution
Resolution: 3.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 8fjs
Q-score: 0.573
Kreutzberger MAB, Cvirkaite-Krupovic V, Liu Y, Baquero DP, Liu J, Sonani RR, Calladine CR, Wang F, Krupovic M, Egelman EH
PNAS (2023) 120 pp. e2304256120-e2304256120 [ DOI: doi:10.1073/pnas.2304256120 Pubmed: 37399404 ]
Asymmetric cryo-EM structure of a curved Saccharolobus solfataricus type IV pilus
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8fk0
Q-score: 0.449
Kreutzberger MAB, Cvirkaite-Krupovic V, Liu Y, Baquero DP, Liu J, Sonani RR, Calladine CR, Wang F, Krupovic M, Egelman EH
PNAS (2023) 120 pp. e2304256120-e2304256120 [ Pubmed: 37399404 DOI: doi:10.1073/pnas.2304256120 ]
Structure of the Pyrobaculum calidifontis flagellar-like archaeal type IV pilus
Resolution: 4.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 8fk7
Q-score: 0.411
Kreutzberger MAB, Cvirkaite-Krupovic V, Liu Y, Baquero DP, Liu J, Sonani RR, Calladine CR, Wang F, Krupovic M, Egelman EH
PNAS (2023) 120 pp. e2304256120-e2304256120 [ Pubmed: 37399404 DOI: doi:10.1073/pnas.2304256120 ]
- Flagellin (14 kDa, Protein from Pyrobaculum calidifontis)
- Archaeal type iv pilus (Complex from Pyrobaculum calidifontis)
Cryo-EM structure of conjugative pili from Pyrobaculum calidifontis
Resolution: 4.1 Å
EM Method: Helical reconstruction
Fitted PDBs: 8dft
Q-score: 0.384
Beltran LC, Cvirkaite-Krupovic V, Miller J, Wang F, Kreutzberger MAB, Patkowski JB, Costa TRD, Schouten S, Levental I, Conticello VP, Egelman EH, Krupovic M
Nat Commun (2023) 14 pp. 666-666 [ Pubmed: 36750723 DOI: doi:10.1038/s41467-023-36349-8 ]
- Pilin protein (11 kDa, Protein from Pyrobaculum calidifontis)
- [(2~{s},7~{s},11~{s},15~{s},19~{r},22~{r},26~{s},30~{r},34~{r},38~{s},43~{s},47~{s},51~{s},55~{r},58~{r},62~{s},66~{r},70~{r})-38-(hydroxymethyl)-7,11,15,19,22,26,30,34,43,47,51,55,58,62,66,70-hexadecamethyl-1,4,37,40-tetraoxacyclodoheptacont-2-yl]methanol (1 kDa, Ligand)
- P. calidifontis pilin protein (Cellular component from Pyrobaculum calidifontis)
Cryo-EM structure of conjugation pili from Aeropyrum pernix
Resolution: 3.44 Å
EM Method: Helical reconstruction
Fitted PDBs: 8dfu
Q-score: 0.508
Beltran LC, Cvirkaite-Krupovic V, Miller J, Wang F, Kreutzberger MAB, Patkowski JB, Costa TRD, Schouten S, Levental I, Conticello VP, Egelman EH, Krupovic M
Nat Commun (2023) 14 pp. 666-666 [ Pubmed: 36750723 DOI: doi:10.1038/s41467-023-36349-8 ]
Agrobacterium tumefaciens Tpilus
Resolution: 3.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 8exh
Q-score: 0.482
Beltran LC, Cvirkaite-Krupovic V, Miller J, Wang F, Kreutzberger MAB, Patkowski JB, Costa TRD, Schouten S, Levental I, Conticello VP, Egelman EH, Krupovic M
Nat Commun (2023) 14 pp. 666-666 [ Pubmed: 36750723 DOI: doi:10.1038/s41467-023-36349-8 ]
Micrographs of viruses ATV and AFV6
Wang F, Cvirkaite-Krupovic V, Vos M, Beltran LC, Kreutzberger MAB, Winter JM, Su Z, Liu J, Schouten S, Krupovic M, Egelman EH
Cell (2022) 185 pp. 1297-1307.e11 [ Pubmed: 35325592 DOI: 10.1016/j.cell.2022.02.019 ]
Image sets:
Cryo-EM of A. pernix flagellum
Resolution: 3.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 7txi
Q-score: 0.473
Kreutzberger MAB, Cvirkaite-Krupovic V, Liu Y, Baquero DP, Liu J, Sonani RR, Calladine CR, Wang F, Krupovic M, Egelman EH
PNAS (2023) 120 pp. e2304256120-e2304256120 [ DOI: doi:10.1073/pnas.2304256120 Pubmed: 37399404 ]
- Probable flagellin 1 (21 kDa, Protein from Aeropyrum pernix)
- A. pernix flagellum (Complex from Aeropyrum pernix)