Structure of baseplate with receptor binding complex of Agrobacterium phage Milano
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8fqc
Q-score: 0.498
Sonani RR, Palmer LK, Esteves NC, Horton AA, Sebastian AL, Kelly RJ, Wang F, Kreutzberger MAB, Russell WK, Leiman PG, Scharf BE, Egelman EH
Nat Commun (2024) 15 pp. 756-756 [ Pubmed: 38272938 DOI: doi:10.1038/s41467-024-44959-z ]
- Tail spike protein, gp124 (61 kDa, Protein from Agrobacterium phage Milano)
- Baseplate wedge 1, gp28 (19 kDa, Protein from Agrobacterium phage Milano)
- Short tail fibers, gp31 (31 kDa, Protein from Agrobacterium phage Milano)
- Baseplate wedge 2 protein, gp29 (43 kDa, Protein from Agrobacterium phage Milano)
- Baseplate hub protein, gp26 (49 kDa, Protein from Agrobacterium phage Milano)
- Tail-tube, gp21 (14 kDa, Protein from Agrobacterium phage Milano)
- Agrobacterium phage milano (Virus from Agrobacterium phage Milano)
- Tail sheath protein, gp20 (53 kDa, Protein from Agrobacterium phage Milano)
- Baseplate central spike, gp27 (20 kDa, Protein from Agrobacterium phage Milano)
- Baseplate wedge 3 protein, gp30 (31 kDa, Protein from Agrobacterium phage Milano)
- Fe (iii) ion (55 Da, Ligand)
- Baseplate centerpiece, gp25 (43 kDa, Protein from Agrobacterium phage Milano)
Structure of Agrobacterium tumefaciens bacteriophage Milano curved tail
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8fop
Q-score: 0.489
Sonani RR, Palmer LK, Esteves NC, Horton AA, Sebastian AL, Kelly RJ, Wang F, Kreutzberger MAB, Russell WK, Leiman PG, Scharf BE, Egelman EH
Nat Commun (2024) 15 pp. 756-756 [ DOI: doi:10.1038/s41467-024-44959-z Pubmed: 38272938 ]
- Virion-associated protein (14 kDa, Protein from Agrobacterium phage Milano)
- Tail sheath protein (53 kDa, Protein from Agrobacterium phage Milano)
- Agrobacterium phage milano (Virus from Agrobacterium phage Milano)
Structure of Agrobacterium tumefaciens bacteriophage Milano contracted tail-tube
Resolution: 3.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 8fou
Q-score: 0.515
Sonani RR, Palmer LK, Esteves NC, Horton AA, Sebastian AL, Kelly RJ, Wang F, Kreutzberger MAB, Russell WK, Leiman PG, Scharf BE, Egelman EH
Nat Commun (2024) 15 pp. 756-756 [ DOI: doi:10.1038/s41467-024-44959-z Pubmed: 38272938 ]
Portal assembly of Agrobacterium phage Milano
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8fwb
Q-score: 0.496
Sonani RR, Esteves NC, Horton AA, Kelly RJ, Sebastian AL, Wang F, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH
Commun Biol (2023) 6 pp. 921-921 [ DOI: doi:10.1038/s42003-023-05292-1 Pubmed: 37684529 ]
Neck structure of Agrobacterium phage Milano, C3 symmetry
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 8fwe
Q-score: 0.475
Sonani RR, Esteves NC, Horton AA, Kelly RJ, Sebastian AL, Wang F, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH
Commun Biol (2023) 6 pp. 921-921 [ DOI: doi:10.1038/s42003-023-05292-1 Pubmed: 37684529 ]
- Tail-terminator protein, gp18 (20 kDa, Protein from Agrobacterium phage Milano)
- Tail-tube, gp21 (14 kDa, Protein from Agrobacterium phage Milano)
- Agrobacterium phage milano (Virus from Agrobacterium phage Milano)
- Portal protein, gp7 (45 kDa, Protein from Agrobacterium phage Milano)
- Neck 2 protein, gp15 (16 kDa, Protein from Agrobacterium phage Milano)
- Collar sheath protein, gp13 (24 kDa, Protein from Agrobacterium phage Milano)
- Neck 1 protein, gp14 (22 kDa, Protein from Agrobacterium phage Milano)
Structure of neck and portal vertex of Agrobacterium phage Milano, C5 symmetry
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 8fwg
Q-score: 0.491
Sonani RR, Esteves NC, Horton AA, Kelly RJ, Sebastian AL, Wang F, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH
Commun Biol (2023) 6 pp. 921-921 [ DOI: doi:10.1038/s42003-023-05292-1 Pubmed: 37684529 ]
- Linking protein 2, gp128 (3 kDa, Protein from Agrobacterium phage Milano)
- Minor capsid protein, gp10 (14 kDa, Protein from Agrobacterium phage Milano)
- Agrobacterium phage milano (Virus from Agrobacterium phage Milano)
- Linking protein 1, gp16 (22 kDa, Protein from Agrobacterium phage Milano)
- Collar sheath protein, gp13 (24 kDa, Protein from Agrobacterium phage Milano)
- Major capsid protein, gp9 (52 kDa, Protein from Agrobacterium phage Milano)
- Neck 1 protein, gp14 (22 kDa, Protein from Agrobacterium phage Milano)
Structure of tail-neck junction of Agrobacterium phage Milano
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 8fwm
Q-score: 0.427
Sonani RR, Esteves NC, Horton AA, Kelly RJ, Sebastian AL, Wang F, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH
Commun Biol (2023) 6 pp. 921-921 [ Pubmed: 37684529 DOI: doi:10.1038/s42003-023-05292-1 ]
- Tail sheath protein (53 kDa, Protein from Agrobacterium phage Milano)
- Tail-tube, gp21 (14 kDa, Protein from Agrobacterium phage Milano)
- Agrobacterium phage milano (Virus from Agrobacterium phage Milano)
- Tail-terminator protein, gp18 (20 kDa, Protein from Agrobacterium phage Milano)
- Collar sheath protein, gp13 (24 kDa, Protein from Agrobacterium phage Milano)
Cryo-EM structure of Natrinema sp. J7-2 Type IV pilus
Resolution: 3.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 8gi2
Q-score: 0.543
Kreutzberger MAB, Cvirkaite-Krupovic V, Liu Y, Baquero DP, Liu J, Sonani RR, Calladine CR, Wang F, Krupovic M, Egelman EH
PNAS (2023) 120 pp. e2304256120-e2304256120 [ DOI: doi:10.1073/pnas.2304256120 Pubmed: 37399404 ]
- Natrinema pilin, orf10 (17 kDa, Protein from Natrinema sp. J7-2)
- Type iv pili (Complex from Natrinema sp. J7-2)
Structure of the Saccharolobus solfataricus archaeal type IV pilus at 3 Angstrom resolution
Resolution: 3.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 8fjs
Q-score: 0.573
Kreutzberger MAB, Cvirkaite-Krupovic V, Liu Y, Baquero DP, Liu J, Sonani RR, Calladine CR, Wang F, Krupovic M, Egelman EH
PNAS (2023) 120 pp. e2304256120-e2304256120 [ DOI: doi:10.1073/pnas.2304256120 Pubmed: 37399404 ]
Cryo-EM structure of conjugation pili from Aeropyrum pernix
Resolution: 3.44 Å
EM Method: Helical reconstruction
Fitted PDBs: 8dfu
Q-score: 0.508
Beltran LC, Cvirkaite-Krupovic V, Miller J, Wang F, Kreutzberger MAB, Patkowski JB, Costa TRD, Schouten S, Levental I, Conticello VP, Egelman EH, Krupovic M
Nat Commun (2023) 14 pp. 666-666 [ Pubmed: 36750723 DOI: doi:10.1038/s41467-023-36349-8 ]