SARS-CoV-2 RBD in complex with A5-10 Fab and A34-2 Fab
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7f3q
Q-score: 0.482
Dou Y, Xu K, Deng YQ, Jia Z, Lan J, Xu X, Zhang G, Cao T, Liu P, Wang X, Wang X, Xu L, Du P, Qin CF, Liu H, Li Y, Wu G, Wang K, Lu B
Antib Ther (2023) 6 pp. 76-86 [ Pubmed: 37077472 DOI: doi:10.1093/abt/tbad002 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Heavy chain of a34-2 fab (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 s protein rbd in complex with two fabs (Complex)
- Light chain of a5-10 fab (22 kDa, Protein from Homo sapiens)
- Fab (Complex from Homo sapiens)
- Sars-cov-2 s protein rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of a34-2 fab (22 kDa, Protein from Homo sapiens)
- Heavy chain of a5-10 fab (24 kDa, Protein from Homo sapiens)
- 2-(n-morpholino)-ethanesulfonic acid (195 Da, Ligand)
S protein of SARS-CoV-2 in complex bound with P36-5D2(state2)
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 7fae
Q-score: 0.292
Shan S, Mok CK, Zhang S, Lan J, Li J, Yang Z, Wang R, Cheng L, Fang M, Aw ZQ, Yu J, Zhang Q, Shi X, Zhang T, Zhang Z, Wang J, Wang X, Chu JJH, Zhang L
Front Immunol (2021) 12 pp. 766821-766821 [ DOI: doi:10.3389/fimmu.2021.766821 Pubmed: 34966387 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- P36-5d2 antibody fab (Complex)
- P36-5d2 heavy chain (51 kDa, Protein from Homo sapiens)
- S protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S protein of sars-cov-2 in complex bound with p36-5d2 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- P36-5d2 light chain (25 kDa, Protein from Homo sapiens)
S protein of SARS-CoV-2 in complex bound with P36-5D2 (state1)
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 7faf
Q-score: 0.258
Shan S, Mok CK, Zhang S, Lan J, Li J, Yang Z, Wang R, Cheng L, Fang M, Aw ZQ, Yu J, Zhang Q, Shi X, Zhang T, Zhang Z, Wang J, Wang X, Chu JJH, Zhang L
Front Immunol (2021) 12 pp. 766821-766821 [ DOI: doi:10.3389/fimmu.2021.766821 Pubmed: 34966387 ]
- P36-5d2 fab (Complex)
- P36-5d2 heavy chain (51 kDa, Protein from Homo sapiens)
- S protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S protein of sars-cov-2 in complex bound with p36-5d2 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- P36-5d2 light chain (25 kDa, Protein from Homo sapiens)
SARS-COV-2 Spike RBDMACSp6 binding to hACE2
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 7fdg
Q-score: 0.364
Sun S, Gu H, Cao L, Chen Q, Ye Q, Yang G, Li RT, Fan H, Deng YQ, Song X, Qi Y, Li M, Lan J, Feng R, Guo Y, Zhu N, Qin S, Wang L, Zhang YF, Zhou C, Zhao L, Chen Y, Shen M, Cui Y, Yang X, Wang X, Tan W, Wang H, Wang X, Qin CF
Nat Commun (2021) 12 pp. 5654-5654 [ Pubmed: 34580297 DOI: doi:10.1038/s41467-021-25903-x ]
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (24 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike rbdmacsp6-hace2 complex (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-COV-2 Spike RBDMACSp25 binding to hACE2
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 7fdh
Q-score: 0.433
Sun S, Gu H, Cao L, Chen Q, Ye Q, Yang G, Li RT, Fan H, Deng YQ, Song X, Qi Y, Li M, Lan J, Feng R, Guo Y, Zhu N, Qin S, Wang L, Zhang YF, Zhou C, Zhao L, Chen Y, Shen M, Cui Y, Yang X, Wang X, Tan W, Wang H, Wang X, Qin CF
Nat Commun (2021) 12 pp. 5654-5654 [ Pubmed: 34580297 DOI: doi:10.1038/s41467-021-25903-x ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike rbdmacsp25-hace2 complex (Complex from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Homo sapiens)
- Spike protein s1 (24 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-COV-2 Spike RBDMACSp36 binding to hACE2
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 7fdi
Q-score: 0.492
Sun S, Gu H, Cao L, Chen Q, Ye Q, Yang G, Li RT, Fan H, Deng YQ, Song X, Qi Y, Li M, Lan J, Feng R, Guo Y, Zhu N, Qin S, Wang L, Zhang YF, Zhou C, Zhao L, Chen Y, Shen M, Cui Y, Yang X, Wang X, Tan W, Wang H, Wang X, Qin CF
Nat Commun (2021) 12 pp. 5654-5654 [ Pubmed: 34580297 DOI: doi:10.1038/s41467-021-25903-x ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (24 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike rbdmacsp36-hace2 (Complex from Homo sapiens)
SARS-COV-2 Spike RBDMACSp36 binding to mACE2
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 7fdk
Q-score: 0.442
Sun S, Gu H, Cao L, Chen Q, Ye Q, Yang G, Li RT, Fan H, Deng YQ, Song X, Qi Y, Li M, Lan J, Feng R, Guo Y, Zhu N, Qin S, Wang L, Zhang YF, Zhou C, Zhao L, Chen Y, Shen M, Cui Y, Yang X, Wang X, Tan W, Wang H, Wang X, Qin CF
Nat Commun (2021) 12 pp. 5654-5654 [ Pubmed: 34580297 DOI: doi:10.1038/s41467-021-25903-x ]
- Sars-cov-2 spike rbdmacsp36-mace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s1 (24 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)