SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 7y71
Q-score: 0.415
Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Kwek MSS, Greaney AJ, Chen M, Au GG, Paradkar PN, Peiris M, Chung AW, Bloom JD, Lye D, Lok S, Wang LF
Sci Adv (2023) 9 pp. eade3470-eade3470 [ DOI: doi:10.1126/sciadv.ade3470 Pubmed: 37494438 ]
- Spike glycoprotein (132 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike glycoprotein trimer complexed with fab fragment of anti-rbd antibody e7 (Complex from Homo sapiens)
- Fab e7 heavy chain (23 kDa, Protein from Homo sapiens)
- Fab e7 light chain (23 kDa, Protein from Homo sapiens)
Resolution: 4.03 Å
EM Method: Single-particle
Fitted PDBs: 7y72
Q-score: 0.395
Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Kwek MSS, Greaney AJ, Chen M, Au GG, Paradkar PN, Peiris M, Chung AW, Bloom JD, Lye D, Lok S, Wang LF
Sci Adv (2023) 9 pp. eade3470-eade3470 [ DOI: doi:10.1126/sciadv.ade3470 Pubmed: 37494438 ]
- Fab e7 light chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (132 kDa, Protein from Homo sapiens)
- Fab e7 heavy chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike glycoprotein trimer complexed with fab fragment of anti-rbd antibody e7 (Complex from Homo sapiens)
SARS-CoV-2 Spike in complex with biparatopic nanobody BP10
Pymm P, Redmond SJ, Dolezal O, Mordant F, Lopez E, Cooney JP, Davidson KC, Haycroft ER, Tan CW, Seneviratna R, Grimley SL, Purcell DFJ, Kent SJ, Wheatley AK, Wang LF, Leis A, Glukhova A, Pellegrini M, Chung AW, Subbarao K, Uldrich AP, Tham WH, Godfrey DI, Gherardin NA
iScience (2022) 25 pp. 105259-105259 [ DOI: doi:10.1016/j.isci.2022.105259 Pubmed: 36213007 ]
- Bp10 biparatopic nanobody (Protein from Vicugna pacos)
- Bp10 biparatopic nanobody (Complex from Vicugna pacos)
- Sars-cov-2 spike in complex with biparatopic nanobody bp10 (1 MDa, Complex)
- Sars-cov-2 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike (Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 RBD in complex with biparatopic nanobody BP10 local refinement
Pymm P, Redmond SJ, Dolezal O, Mordant F, Lopez E, Cooney JP, Davidson KC, Haycroft ER, Tan CW, Seneviratna R, Grimley SL, Purcell DFJ, Kent SJ, Wheatley AK, Wang LF, Leis A, Glukhova A, Pellegrini M, Chung AW, Subbarao K, Uldrich AP, Tham WH, Godfrey DI, Gherardin NA
iScience (2022) 25 pp. 105259-105259 [ DOI: doi:10.1016/j.isci.2022.105259 Pubmed: 36213007 ]
- Sars-cov-2 spike in complex with biparatopic nanobody bp10 (1 MDa, Complex)
- Sars-cov-2 rbd (Protein from Severe acute respiratory syndrome coronavirus 2)
- Bp10 biparatopic nanobody (Protein from Vicugna pacos)
- Sars-cov-2 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Bp10 biparatopic nanobody (Complex from Vicugna pacos)
SARS-CoV-2 Spike bound to Fab PDI 210
Wheatley AK, Pymm P, Esterbauer R, Dietrich MH, Lee WS, Drew D, Kelly HG, Chan LJ, Mordant FL, Black KA, Adair A, Tan HX, Juno JA, Wragg KM, Amarasena T, Lopez E, Selva KJ, Haycroft ER, Cooney JP, Venugopal H, Tan LL, O Neill MT, Allison CC, Cromer D, Davenport MP, Bowen RA, Chung AW, Pellegrini M, Liddament MT, Glukhova A, Subbarao K, Kent SJ, Tham WH
Cell Rep (2021) 37 pp. 109822-109822 [ Pubmed: 34610292 DOI: doi:10.1016/j.celrep.2021.109822 ]
SARS-CoV-2 Spike bound to Fab PDI 96
Wheatley AK, Pymm P, Esterbauer R, Dietrich MH, Lee WS, Drew D, Kelly HG, Chan LJ, Mordant FL, Black KA, Adair A, Tan HX, Juno JA, Wragg KM, Amarasena T, Lopez E, Selva KJ, Haycroft ER, Cooney JP, Venugopal H, Tan LL, O Neill MT, Allison CC, Cromer D, Davenport MP, Bowen RA, Chung AW, Pellegrini M, Liddament MT, Glukhova A, Subbarao K, Kent SJ, Tham WH
Cell Rep (2021) 37 pp. 109822-109822 [ Pubmed: 34610292 DOI: doi:10.1016/j.celrep.2021.109822 ]
SARS-CoV-2 Spike bound to Fab PDI 215
Wheatley AK, Pymm P, Esterbauer R, Dietrich MH, Lee WS, Drew D, Kelly HG, Chan LJ, Mordant FL, Black KA, Adair A, Tan HX, Juno JA, Wragg KM, Amarasena T, Lopez E, Selva KJ, Haycroft ER, Cooney JP, Venugopal H, Tan LL, O Neill MT, Allison CC, Cromer D, Davenport MP, Bowen RA, Chung AW, Pellegrini M, Liddament MT, Glukhova A, Subbarao K, Kent SJ, Tham WH
Cell Rep (2021) 37 pp. 109822-109822 [ Pubmed: 34610292 DOI: doi:10.1016/j.celrep.2021.109822 ]
SARS-CoV-2 Spike bound to Fab WCSL 119
Wheatley AK, Pymm P, Esterbauer R, Dietrich MH, Lee WS, Drew D, Kelly HG, Chan LJ, Mordant FL, Black KA, Adair A, Tan HX, Juno JA, Wragg KM, Amarasena T, Lopez E, Selva KJ, Haycroft ER, Cooney JP, Venugopal H, Tan LL, O Neill MT, Allison CC, Cromer D, Davenport MP, Bowen RA, Chung AW, Pellegrini M, Liddament MT, Glukhova A, Subbarao K, Kent SJ, Tham WH
Cell Rep (2021) 37 pp. 109822-109822 [ Pubmed: 34610292 DOI: doi:10.1016/j.celrep.2021.109822 ]
SARS-CoV-2 Spike bound to Fab WCSL 129
Wheatley AK, Pymm P, Esterbauer R, Dietrich MH, Lee WS, Drew D, Kelly HG, Chan LJ, Mordant FL, Black KA, Adair A, Tan HX, Juno JA, Wragg KM, Amarasena T, Lopez E, Selva KJ, Haycroft ER, Cooney JP, Venugopal H, Tan LL, O Neill MT, Allison CC, Cromer D, Davenport MP, Bowen RA, Chung AW, Pellegrini M, Liddament MT, Glukhova A, Subbarao K, Kent SJ, Tham WH
Cell Rep (2021) 37 pp. 109822-109822 [ Pubmed: 34610292 DOI: doi:10.1016/j.celrep.2021.109822 ]
SARS-CoV-2 Spike bound to Fab PDI 93
Wheatley AK, Pymm P, Esterbauer R, Dietrich MH, Lee WS, Drew D, Kelly HG, Chan LJ, Mordant FL, Black KA, Adair A, Tan HX, Juno JA, Wragg KM, Amarasena T, Lopez E, Selva KJ, Haycroft ER, Cooney JP, Venugopal H, Tan LL, O Neill MT, Allison CC, Cromer D, Davenport MP, Bowen RA, Chung AW, Pellegrini M, Liddament MT, Glukhova A, Subbarao K, Kent SJ, Tham WH
Cell Rep (2021) 37 pp. 109822-109822 [ Pubmed: 34610292 DOI: doi:10.1016/j.celrep.2021.109822 ]