Human PAC in nanodisc at pH 4.0 with PI(4,5)P2 diC8
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 8eq4
Q-score: 0.516
Mihaljevic L, Ruan Z, Osei-Owusu J, Lu W, Qiu Z
eLife (2023) 12 [ Pubmed: 36633397 DOI: doi:10.7554/eLife.83935 ]
- Proton activated chloride channel at ph 4.0 with 0.5mm pip2 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Proton-activated chloride channel (40 kDa, Protein from Homo sapiens)
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
Human PAC in nanodisc at pH 4.0 with PI(4,5)P2 diC8
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8fbl
Q-score: 0.538
Mihaljevic L, Ruan Z, Osei-Owusu J, Lu W, Qiu Z
eLife (2023) 12 [ Pubmed: 36633397 DOI: doi:10.7554/eLife.83935 ]
- Proton activated chloride channel at ph 4.0 with 0.5mm pip2 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Proton-activated chloride channel (32 kDa, Protein from Homo sapiens)
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
ABC transporter NosFY, nucleotide-free in GDN
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7o0z
Q-score: 0.371
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ DOI: doi:10.1038/s41586-022-05015-2 Pubmed: 35896743 ]
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Abc transporter nosfy (Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter atp-binding protein nosf (33 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
ABC transporter NosDFY, nucleotide-free in lipid nanodisc
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7o13
Q-score: 0.403
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ DOI: doi:10.1038/s41586-022-05015-2 Pubmed: 35896743 ]
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter binding protein nosd (48 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Abc transporter nosfy in complex with accessory periplasmic protein nosd (Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter atp-binding protein nosf (33 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
CryoEM structure of the ABC transporter NosDFY complexed with nitrous oxide reductase NosZ
Resolution: 3.78 Å
EM Method: Single-particle
Fitted PDBs: 7qba
Q-score: 0.45
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ DOI: doi:10.1038/s41586-022-05015-2 Pubmed: 35896743 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri)
- Nitrous-oxide reductase (71 kDa, Protein from Pseudomonas stutzeri)
- Magnesium ion (24 Da, Ligand)
- Probable abc transporter binding protein nosd (48 kDa, Protein from Pseudomonas stutzeri)
- Heteroheptamer complex of noszdfy (Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter atp-binding protein nosf (34 kDa, Protein from Pseudomonas stutzeri)
- Calcium ion (40 Da, Ligand)
ABC transporter complex NosDFYL in GDN
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 7znq
Q-score: 0.493
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ DOI: doi:10.1038/s41586-022-05015-2 Pubmed: 35896743 ]
- Copper-binding lipoprotein nosl (21 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Hetero-hexameric complex of nosdf2y2l (192 kDa, Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter atp-binding protein nosf (33 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Copper (ii) ion (63 Da, Ligand)
- Probable abc transporter binding protein nosd (48 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)
ABC Transporter complex NosDFYL, R-domain 1
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7osf
Q-score: 0.431
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ DOI: doi:10.1038/s41586-022-05015-2 Pubmed: 35896743 ]
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter atp-binding protein nosf (33 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Copper-binding lipoprotein nosl (20 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Water (18 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- Probable abc transporter binding protein nosd (48 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Abc transporter nosfy in complex with accessory periplasmic protein nosd and cu chaperone nosl (Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)
ABC Transporter complex NosDFYL, consensus refinement
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7osg
Q-score: 0.457
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ DOI: doi:10.1038/s41586-022-05015-2 Pubmed: 35896743 ]
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter atp-binding protein nosf (33 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Copper-binding lipoprotein nosl (20 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Water (18 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- Probable abc transporter binding protein nosd (48 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Abc transporter nosfy in complex with accessory periplasmic protein nosd and cu chaperone nosl (Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)
ABC Transporter complex NosDFYL, R-domain 3
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7osi
Q-score: 0.42
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ DOI: doi:10.1038/s41586-022-05015-2 Pubmed: 35896743 ]
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter atp-binding protein nosf (33 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Copper-binding lipoprotein nosl (20 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Water (18 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- Probable abc transporter binding protein nosd (48 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Abc transporter nosfy in complex with accessory periplasmic protein nosd and cu chaperone nosl (Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)
ABC transporter NosDFY, nucleotide-free in GDN
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7o0y
Q-score: 0.485
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ DOI: doi:10.1038/s41586-022-05015-2 Pubmed: 35896743 ]
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Probable abc transporter atp-binding protein nosf (33 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Water (18 Da, Ligand)
- Probable abc transporter binding protein nosd (48 kDa, Protein from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
- Magnesium ion (24 Da, Ligand)
- Abc transporter nosfy in complex with accessory periplasmic protein nosd (Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)