EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

Edit your search query here and hit Return to execute it:

primary_citation_author:"Qi Y" AND assembly_molecular_weight:{2000000 TO 5000000] AND resolution:[6 TO 8} AND author_name:"Ren Y" AND author_orcid:"0000-0002-5884-9088" AND author_name:"Li Y" AND author_orcid:"0000-0001-5085-175x" AND author_orcid:"0000-0002-4120-104x" AND sample_type:"protein" AND author_orcid:"0000-0001-6713-3113" AND xref_links:"pdb"

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EMD-31107

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TFIID-based core PIC on SCP promoter

Release date: May 5, 2021
Resolution: 6.2 Å
EM Method: Single-particle
Fitted PDBs: 7eg7
Q-score: 0.092

Chen X, Qi Y, Wu Z, Wang X, Li J, Zhao D, Hou H, Li Y, Yu Z, Liu W, Wang M, Ren Y, Li Z, Yang H, Xu Y

Science (2021) 372 [ DOI: doi:10.1126/science.aba8490 Pubmed: 33795473 ]

Sample:

Transcription initiation factor tfiid subunit 11 (23 kDa, Protein from Homo sapiens)
Transcription initiation factor tfiid subunit 13 (14 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase ii subunit rpb3 (31 kDa, Protein from Pig)
Rpb10 (7 kDa, Protein from Pig)
Rna polymerase ii (Complex from Sus scrofa)
Dna-directed rna polymerase ii subunit rpb4 (16 kDa, Protein from Pig)
Transcription initiation factor tfiid subunit 6 (72 kDa, Protein from Homo sapiens)
Transcription initiation factor tfiid subunit 8 (34 kDa, Protein from Homo sapiens)
Tfiid (Complex from Homo sapiens)
Tata-box-binding protein (37 kDa, Protein from Homo sapiens)
Rpb12 (7 kDa, Protein from Pig)
Transcription initiation factor tfiid subunit 4 (110 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase ii subunit f (14 kDa, Protein from Pig)
General transcription factor iif subunit 1 (58 kDa, Protein from Homo sapiens)
Transcription initiation factor tfiid subunit 2 (137 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Pig)
Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Pig)
Transcription initiation factor tfiid subunit 12 (17 kDa, Protein from Homo sapiens)
Transcription initiation factor iib (34 kDa, Protein from Homo sapiens)
Dna(scp promoters) (Complex)
Zinc ion (65 Da, Ligand)
Transcription initiation factor iia subunit 1 (41 kDa, Protein from Homo sapiens)
Rna_pol_l_2 domain-containing protein (13 kDa, Protein from Pig)
Dna (79-mer) (24 kDa, DNA from Homo sapiens)
Tfiib (Complex from Homo sapiens)
Transcription initiation factor tfiid subunit 10 (21 kDa, Protein from Homo sapiens)
Transcription initiation factor tfiid subunit 5 (86 kDa, Protein from Homo sapiens)
Magnesium ion (24 Da, Ligand)
Transcription initiation factor tfiid subunit 3 (103 kDa, Protein from Homo sapiens)
Transcription initiation factor tfiid subunit 7 (40 kDa, Protein from Homo sapiens)
General transcription factor iif subunit 2 (28 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase ii subunit e (24 kDa, Protein from Pig)
Transcription initiation factor tfiid subunit 9 (29 kDa, Protein from Homo sapiens)
Rpb1 (217 kDa, Protein from Pig)
Tfiia (Complex from Homo sapiens)
Tfiif (Complex from Homo sapiens)
Transcription initiation factor iia subunit 2 (12 kDa, Protein from Homo sapiens)
Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Pig)
Dna-directed rna polymerase subunit beta (134 kDa, Protein from Pig)
Dna (79-mer) (24 kDa, DNA from Homo sapiens)
Transcription initiation factor tfiid subunit 1 (212 kDa, Protein from Homo sapiens)
Tfiid-based core pic on scp promoter (Complex)

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EMD-31108

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TFIID-based core PIC on PUMA promoter

Release date: May 5, 2021
Resolution: 7.4 Å
EM Method: Single-particle
Fitted PDBs: 7eg8
Q-score: 0.074

Chen X, Qi Y, Wu Z, Wang X, Li J, Zhao D, Hou H, Li Y, Yu Z, Liu W, Wang M, Ren Y, Li Z, Yang H, Xu Y

Science (2021) 372 [ DOI: doi:10.1126/science.aba8490 Pubmed: 33795473 ]

Sample:

Dna (85-mer) (26 kDa, DNA from Homo sapiens)
Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Pig)
Rna polymerase ii (Complex from Sus scrofa)
Transcription initiation factor tfiid subunit 10 (21 kDa, Protein from Homo sapiens)
Rpb12 (7 kDa, Protein from Pig)
Rna_pol_l_2 domain-containing protein (13 kDa, Protein from Pig)
Transcription initiation factor tfiid subunit 3 (103 kDa, Protein from Homo sapiens)
Tfiid-based core pic on puma promoter (Complex)
Transcription initiation factor tfiid subunit 12 (17 kDa, Protein from Homo sapiens)
Transcription initiation factor iib (34 kDa, Protein from Homo sapiens)
Rpb1 (217 kDa, Protein from Pig)
Transcription initiation factor iia subunit 2 (12 kDa, Protein from Homo sapiens)
Magnesium ion (24 Da, Ligand)
Dna-directed rna polymerase ii subunit rpb3 (31 kDa, Protein from Pig)
Transcription initiation factor iia subunit 1 (41 kDa, Protein from Homo sapiens)
Transcription initiation factor tfiid subunit 7 (40 kDa, Protein from Homo sapiens)
Dna (85-mer) (26 kDa, DNA from Homo sapiens)
Dna(scp promoters) (Complex)
Transcription initiation factor tfiid subunit 2 (137 kDa, Protein from Homo sapiens)
Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Pig)
Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Pig)
Rpb10 (7 kDa, Protein from Pig)
Transcription initiation factor tfiid subunit 6 (72 kDa, Protein from Homo sapiens)
Transcription initiation factor tfiid subunit 5 (86 kDa, Protein from Homo sapiens)
Tata-box-binding protein (37 kDa, Protein from Homo sapiens)
Transcription initiation factor tfiid subunit 8 (34 kDa, Protein from Homo sapiens)
Tfiib (Complex from Homo sapiens)
Transcription initiation factor tfiid subunit 13 (14 kDa, Protein from Homo sapiens)
General transcription factor iif subunit 2 (28 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
Dna-directed rna polymerase ii subunit f (14 kDa, Protein from Pig)
Transcription initiation factor tfiid subunit 1 (212 kDa, Protein from Homo sapiens)
Transcription initiation factor tfiid subunit 11 (23 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase ii subunit e (24 kDa, Protein from Pig)
General transcription factor iif subunit 1 (58 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase ii subunit rpb4 (16 kDa, Protein from Pig)
Tfiid (Complex from Homo sapiens)
Transcription initiation factor tfiid subunit 4 (110 kDa, Protein from Homo sapiens)
Transcription initiation factor tfiid subunit 9 (29 kDa, Protein from Homo sapiens)
Dna-directed rna polymerase subunit beta (134 kDa, Protein from Pig)
Tfiif (Complex from Homo sapiens)
Tfiia (Complex from Homo sapiens)

[Show more]

Sort by: Download

Showing 1 - 2 of 2. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [2]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: