Human NLRP1 complexed with thioredoxin (focused map)
Zhang Z, Shibata T, Fujimura A, Kitaura J, Miyake K, Ohto U, Shimizu T
Nature (2023) 622 pp. 188-194 [ DOI: doi:10.1038/s41586-023-06532-4 Pubmed: 37704723 ]
- Hnlrp1 (Complex from Spodoptera frugiperda)
- Hnlrp1 complexed with sftrx (Complex from Homo sapiens)
- Sftrx (Complex)
Human NLRP1 complexed with thioredoxin
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7wge
Q-score: 0.384
Zhang Z, Shibata T, Fujimura A, Kitaura J, Miyake K, Ohto U, Shimizu T
Nature (2023) 622 pp. 188-194 [ DOI: doi:10.1038/s41586-023-06532-4 Pubmed: 37704723 ]
- Hnlrp1 (Complex from Spodoptera frugiperda)
- Thioredoxin (11 kDa, Protein from Spodoptera frugiperda)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Hnlrp1 complexed with sftrx (Complex from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Sftrx (Complex)
- Nacht, lrr and pyd domains-containing protein 1, n-terminus (101 kDa, Protein from Homo sapiens)
Cryo-EM structure of tetrameric TLR3 in complex with dsRNA (90 bp)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7wm4
Q-score: 0.256
Sakaniwa K, Fujimura A, Shibata T, Shigematsu H, Ekimoto T, Yamamoto M, Ikeguchi M, Miyake K, Ohto U, Shimizu T
Nat Commun (2023) 14 pp. 164-164 [ DOI: doi:10.1038/s41467-023-35844-2 Pubmed: 36631495 ]
- Rna (81-mer) (25 kDa, RNA from synthetic construct)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Toll-like receptor 3 (77 kDa, Protein from Mus musculus)
- Rna (81-mer) (25 kDa, RNA from synthetic construct)
- Tetrameric tlr3 in complex with dsrna (90 bp) (Complex from Mus musculus)
Cryo-EM reconstruction of TLR7/Cpd-3 (SM-394830) complex in closed form
Tojo S, Zhang Z, Matsui H, Tahara M, Ikeguchi M, Kochi M, Kamada M, Shigematsu H, Tsutsumi A, Adachi N, Shibata T, Yamamoto M, Kikkawa M, Senda T, Isobe Y, Ohto U, Shimizu T
Nat Commun (2020) 11 pp. 5204-5204 [ DOI: doi:10.1038/s41467-020-19025-z Pubmed: 33060576 ]
- Tlr7/cpd-3 (sm-394830) complex (200 kDa, Complex from Macaca mulatta)
Cryo-EM reconstruction of TLR7/Cpd-6 (DSR-139293) complex in closed form
Tojo S, Zhang Z, Matsui H, Tahara M, Ikeguchi M, Kochi M, Kamada M, Shigematsu H, Tsutsumi A, Adachi N, Shibata T, Yamamoto M, Kikkawa M, Senda T, Isobe Y, Ohto U, Shimizu T
Nat Commun (2020) 11 pp. 5204-5204 [ DOI: doi:10.1038/s41467-020-19025-z Pubmed: 33060576 ]
- Tlr7/cpd-6 (dsr-139293) complex (200 kDa, Complex from Macaca mulatta)
Cryo-EM reconstruction of TLR7/Cpd-6 (DSR-139293) complex in open form
Tojo S, Zhang Z, Matsui H, Tahara M, Ikeguchi M, Kochi M, Kamada M, Shigematsu H, Tsutsumi A, Adachi N, Shibata T, Yamamoto M, Kikkawa M, Senda T, Isobe Y, Ohto U, Shimizu T
Nat Commun (2020) 11 pp. 5204-5204 [ DOI: doi:10.1038/s41467-020-19025-z Pubmed: 33060576 ]
- Tlr7/cpd-6 (dsr-139293) complex (200 kDa, Complex from Macaca mulatta)
Cryo-EM reconstruction of TLR7/Cpd-7 (DSR-139970) complex in open form
Tojo S, Zhang Z, Matsui H, Tahara M, Ikeguchi M, Kochi M, Kamada M, Shigematsu H, Tsutsumi A, Adachi N, Shibata T, Yamamoto M, Kikkawa M, Senda T, Isobe Y, Ohto U, Shimizu T
Nat Commun (2020) 11 pp. 5204-5204 [ DOI: doi:10.1038/s41467-020-19025-z Pubmed: 33060576 ]
- Tlr7/cpd-7 (dsr-139970) complex (200 kDa, Complex from Macaca mulatta)
Cryo-EM structure of TLR7/Cpd-7 (DSR-139970) complex in open form
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6lw1
Q-score: 0.54
Tojo S, Zhang Z, Matsui H, Tahara M, Ikeguchi M, Kochi M, Kamada M, Shigematsu H, Tsutsumi A, Adachi N, Shibata T, Yamamoto M, Kikkawa M, Senda T, Isobe Y, Ohto U, Shimizu T
Nat Commun (2020) 11 pp. 5204-5204 [ DOI: doi:10.1038/s41467-020-19025-z Pubmed: 33060576 ]