SARS-CoV-2 Omicron BQ.1.1 Variant Spike Protein Complexed with MO11 Fab
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8xi6
Q-score: 0.612
Ishimaru H, Nishimura M, Shigematsu H, Marini MI, Hasegawa N, Takamiya R, Iwata S, Mori Y
J Virol (2024) 98 pp. e0041624-e0041624 [ Pubmed: 38624232 DOI: doi:10.1128/jvi.00416-24 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Complex of spike ectodomain with antibody mo11 fab (500 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Mo11 light chain (22 kDa, Protein from Homo sapiens)
- Mo11 heavy chain (24 kDa, Protein from Homo sapiens)
- Spike glycoprotein (138 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Conformation 1 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Resolution: 2.48 Å
EM Method: Single-particle
Fitted PDBs: 8h3m
Q-score: 0.635
Ishimaru H, Nishimura M, Tjan LH, Sutandhio S, Marini MI, Effendi GB, Shigematsu H, Kato K, Hasegawa N, Aoki K, Kurahashi Y, Furukawa K, Shinohara M, Nakamura T, Arii J, Nagano T, Nakamura S, Sano S, Iwata S, Okamura S, Mori Y
J Virol (2023) 97 pp. e0028623-e0028623 [ DOI: doi:10.1128/jvi.00286-23 Pubmed: 37191569 ]
- Mo1 heavy chain (48 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Spike protein complexed with mo1 fab (500 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
Conformation 2 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 8h3n
Q-score: 0.611
Ishimaru H, Nishimura M, Tjan LH, Sutandhio S, Marini MI, Effendi GB, Shigematsu H, Kato K, Hasegawa N, Aoki K, Kurahashi Y, Furukawa K, Shinohara M, Nakamura T, Arii J, Nagano T, Nakamura S, Sano S, Iwata S, Okamura S, Mori Y
J Virol (2023) 97 pp. e0028623-e0028623 [ DOI: doi:10.1128/jvi.00286-23 Pubmed: 37191569 ]
- Mo1 heavy-chain (48 kDa, Protein from Homo sapiens)
- Mo1 light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein complexed with mo1 fab (500 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Conformation 3 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Ishimaru H, Nishimura M, Tjan LH, Sutandhio S, Marini MI, Effendi GB, Shigematsu H, Kato K, Hasegawa N, Aoki K, Kurahashi Y, Furukawa K, Shinohara M, Nakamura T, Arii J, Nagano T, Nakamura S, Sano S, Iwata S, Okamura S, Mori Y
J Virol (2023) 97 pp. e0028623-e0028623 [ DOI: doi:10.1128/jvi.00286-23 Pubmed: 37191569 ]