CAND1-CUL1-RBX1-SKP1-SKP2-CKS1-CDK2
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8or0
Q-score: 0.218
Shaaban M, Clapperton JA, Ding S, Kunzelmann S, Maeots ME, Maslen SL, Skehel JM, Enchev RI
Mol Cell (2023) 83 pp. 2332- [ Pubmed: 37339624 DOI: doi:10.1016/j.molcel.2023.05.034 ]
- Cullin-associated nedd8-dissociated protein 1 (137 kDa, Protein from Homo sapiens)
- Cyclin-dependent kinases regulatory subunit 1 (8 kDa, Protein from Homo sapiens)
- Cyclin-dependent kinase 2 (33 kDa, Protein from Homo sapiens)
- Cand1-cul1-rbx1-skp1-skp2-cks1-cdk2 (Complex from Homo sapiens)
- Cullin-1 (93 kDa, Protein from Homo sapiens)
- S-phase kinase-associated protein 2 (48 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- E3 ubiquitin-protein ligase rbx1 (12 kDa, Protein from Homo sapiens)
- S-phase kinase-associated protein 1 (18 kDa, Protein from Homo sapiens)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8or2
Q-score: 0.368
Shaaban M, Clapperton JA, Ding S, Kunzelmann S, Maeots ME, Maslen SL, Skehel JM, Enchev RI
Mol Cell (2023) 83 pp. 2332- [ Pubmed: 37339624 DOI: doi:10.1016/j.molcel.2023.05.034 ]
- Cullin-associated nedd8-dissociated protein 1 (137 kDa, Protein from Homo sapiens)
- Cullin-1 (93 kDa, Protein from Homo sapiens)
- Dcn1-like protein 1 (30 kDa, Protein from Homo sapiens)
- Cand1-cul1-rbx1-dcnl1 (Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- E3 ubiquitin-protein ligase rbx1 (12 kDa, Protein from Homo sapiens)
CAND1-CUL1-RBX1-SKP1-SKP2-DCNL1
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8or3
Q-score: 0.415
Shaaban M, Clapperton JA, Ding S, Kunzelmann S, Maeots ME, Maslen SL, Skehel JM, Enchev RI
Mol Cell (2023) 83 pp. 2332- [ DOI: doi:10.1016/j.molcel.2023.05.034 Pubmed: 37339624 ]
- E3 ubiquitin-protein ligase rbx1 (12 kDa, Protein from Homo sapiens)
- Dcn1-like protein 1 (30 kDa, Protein from Homo sapiens)
- Cullin-associated nedd8-dissociated protein 1 (137 kDa, Protein from Homo sapiens)
- Cullin-1 (93 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Cand1-cul1-rbx1-skp1-skp2-cks1-cdk2-cycline-dcnl1 (Complex from Homo sapiens)
- S-phase kinase-associated protein 1 (18 kDa, Protein from Homo sapiens)
- S-phase kinase-associated protein 2 (48 kDa, Protein from Homo sapiens)
Partially dissociated CAND1-CUL1-RBX1-SKP1-SKP2-CKS1-CDK2
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8or4
Q-score: 0.285
Shaaban M, Clapperton JA, Ding S, Kunzelmann S, Maeots ME, Maslen SL, Skehel JM, Enchev RI
Mol Cell (2023) 83 pp. 2332- [ Pubmed: 37339624 DOI: doi:10.1016/j.molcel.2023.05.034 ]
- Cullin-associated nedd8-dissociated protein 1 (137 kDa, Protein from Homo sapiens)
- Cyclin-dependent kinases regulatory subunit 1 (8 kDa, Protein from Homo sapiens)
- Cyclin-dependent kinase 2 (33 kDa, Protein from Homo sapiens)
- Cullin-1 (93 kDa, Protein from Homo sapiens)
- Partially dissociated cand1-cul1-rbx1-skp1-skp2-cks1-cdk2 (Complex from Homo sapiens)
- S-phase kinase-associated protein 2 (48 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rbx1 (12 kDa, Protein from Homo sapiens)
- S-phase kinase-associated protein 1 (18 kDa, Protein from Homo sapiens)
Polymerase module of CPF in complex with Mpe1 and a pre-cleaved CYC1 RNA
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7zgp
Q-score: 0.624
Rodriguez-Molina JB, O'Reilly FJ, Fagarasan H, Sheekey E, Maslen S, Skehel JM, Rappsilber J, Passmore LA
Mol Cell (2022) 82 pp. 2490- [ Pubmed: 35584695 DOI: doi:10.1016/j.molcel.2022.04.021 ]
- Polyadenylation factor subunit 2 (53 kDa, Protein from Saccharomyces cerevisiae)
- Pre-cleaved cyc1 (13 kDa, RNA from Saccharomyces cerevisiae)
- Mrna 3'-end-processing protein yth1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Mpe1 isoform 1 (49 kDa, Protein from Saccharomyces cerevisiae)
- Protein cft1 (153 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Polymerase module-mpe1-rna (Complex from Saccharomyces cerevisiae)
Polymerase module of yeast CPF in complex with the yPIM of Cft2
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7zgq
Q-score: 0.582
Rodriguez-Molina JB, O'Reilly FJ, Fagarasan H, Sheekey E, Maslen S, Skehel JM, Rappsilber J, Passmore LA
Mol Cell (2022) 82 pp. 2490- [ DOI: doi:10.1016/j.molcel.2022.04.021 Pubmed: 35584695 ]
- Mrna 3'-end-processing protein yth1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Protein cft1 (153 kDa, Protein from Saccharomyces cerevisiae)
- Cleavage factor two protein 2 (80 kDa, Protein from Saccharomyces cerevisiae)
- Polyadenylation factor subunit 2 (53 kDa, Protein from Saccharomyces cerevisiae)
- Polymerase module-mpe1-cft2(s)-rna (Complex from Saccharomyces cerevisiae)
Polymerase module of yeast CPF in complex with Mpe1, the yPIM of Cft2 and the pre-cleaved CYC1 RNA
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7zgr
Q-score: 0.61
Rodriguez-Molina JB, O'Reilly FJ, Fagarasan H, Sheekey E, Maslen S, Skehel JM, Rappsilber J, Passmore LA
Mol Cell (2022) 82 pp. 2490- [ Pubmed: 35584695 DOI: doi:10.1016/j.molcel.2022.04.021 ]
- Polyadenylation factor subunit 2 (53 kDa, Protein from Saccharomyces cerevisiae)
- Mrna 3'-end-processing protein yth1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Cleavage factor two protein 2 (80 kDa, Protein from Saccharomyces cerevisiae)
- Mpe1 isoform 1 (49 kDa, Protein from Saccharomyces cerevisiae)
- Protein cft1 (153 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Pre-cleaved cyc1 (13 kDa, RNA from Saccharomyces cerevisiae)
- Polymerase module-mpe1-ypim-rna (Complex from Saccharomyces cerevisiae)
Structure of a human 48S translational initiation complex - eIF3bgi
Resolution: 6.0 Å
EM Method: Single-particle
Fitted PDBs: 6ybt
Q-score: 0.288
Brito Querido J, Sokabe M, Kraatz S, Gordiyenko Y, Skehel JM, Fraser CS, Ramakrishnan V
Science (2020) 369 pp. 1220-1227 [ DOI: doi:10.1126/science.aba4904 Pubmed: 32883864 ]
- Eukaryotic translation initiation factor 3 subunit a (163 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit b (92 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit i (36 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor (Complex from Homo sapiens)
CryoEM structure of SERINC from Drosophila melanogaster
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 6sp2
Q-score: 0.482
Pye VE, Rosa A, Bertelli C, Struwe WB, Maslen SL, Corey R, Liko I, Hassall M, Mattiuzzo G, Ballandras-Colas A, Nans A, Takeuchi Y, Stansfeld PJ, Skehel JM, Robinson CV, Pizzato M, Cherepanov P
Nat Struct Mol Biol (2020) 27 pp. 78-83 [ Pubmed: 31907454 DOI: doi:10.1038/s41594-019-0357-0 ]
- Lauryl maltose neopentyl glycol (1 kDa, Ligand)
- Membrane protein tms1d (54 kDa, Protein from Drosophila melanogaster)
- Cardiolipin (1 kDa, Ligand)
- Serinc homo-hexamer (328 kDa, Complex from Drosophila melanogaster)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
Structure of Fanconi anaemia core complex (consensus map)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6sri
Q-score: 0.112
Shakeel S, Rajendra E, Alcon P, O'Reilly F, Chorev DS, Maslen S, Degliesposti G, Russo CJ, He S, Hill CH, Skehel JM, Scheres SHW, Patel KJ, Rappsilber J, Robinson CV, Passmore LA
Nature (2019) 575 pp. 234-237 [ DOI: doi:10.1038/s41586-019-1703-4 Pubmed: 31666700 ]
- Unassigned secondary structure elements (central region, proposed fancb-faap100) (1 kDa, Protein from Gallus gallus)
- Fanconi anaemia protein fancl (42 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (proposed faap100) (3 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (central region, proposed fancb-faap100) (2 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (base region, proposed fancc-fanc-e-fancf) (7 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (base region, proposed fancc-fanc-e-fancf) (2 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (central region, proposed fancb-faap100: chain f,f; base region, proposed fancc-fanc-e-fancf: chain z) (1 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (base region, proposed fancc-fanc-e-fancf) (5 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (proposed faap100) (23 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (central region, proposed fancb-faap100: chain a,a; base region, proposed fancc-fanc-e-fancf: chain 3) (6 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (proposed fancb) (23 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (central region, proposed fancb-faap100) (1 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (base region, proposed fancc-fanc-e-fancf) (6 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (proposed fancb) (10 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (central region, proposed fancb-faap100) (3 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (base region, proposed fancc-fanc-e-fancf) (19 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (central region, proposed fancb-faap100) (2 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (top region, proposed fancg) (24 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (top region, proposed fancg) (12 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (central region, proposed fancb-faap100) (1 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (central region, proposed fancb-faap100) (783 Da, Protein from Gallus gallus)
- Unassigned secondary structure elements (base region, proposed fancc-fanc-e-fancf) (1 kDa, Protein from Gallus gallus)
- Fanconi anaemia core complex (860 kDa, Complex from Gallus gallus)
- Unassigned secondary structure elements (base region, proposed fancc-fanc-e-fancf) (9 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (central region, proposed fancb-faap100) (1 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (base region, proposed fancc-fanc-e-fancf) (1 kDa, Protein from Gallus gallus)
- Unassigned secondary structure elements (central region, proposed fancb-faap100) (2 kDa, Protein from Gallus gallus)
- Base region, proposed fancf (17 kDa, Protein from Gallus gallus)