Resolution: 2.19 Å
EM Method: Single-particle
Fitted PDBs: 7utd
Q-score: 0.496
Grinter R, Kropp A, Venugopal H, Senger M, Badley J, Cabotaje PR, Jia R, Duan Z, Huang P, Stripp ST, Barlow CK, Belousoff M, Shafaat HS, Cook GM, Schittenhelm RB, Vincent KA, Khalid S, Berggren G, Greening C
Nature (2023) 615 pp. 541-547 [ Pubmed: 36890228 DOI: doi:10.1038/s41586-023-05781-7 ]
- Menaquinone-9 (785 Da, Ligand)
- Type 2 [nife]-hydrogenase huc membrane adapter subunit (6 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Hydrogenase-2, large subunit (57 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Carbonmonoxide-(dicyano) iron (135 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Fe3-s4 cluster (295 Da, Ligand)
- Nickel (iii) ion (58 Da, Ligand)
- Hydrogenase-2, small subunit (39 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Complex of the type 2 [nife]-hydrogenase huc from mycobacterium smegmatis (833 kDa, Complex from Mycolicibacterium smegmatis)
Resolution: 1.67 Å
EM Method: Single-particle
Fitted PDBs: 7uur
Q-score: 0.837
Grinter R, Kropp A, Venugopal H, Senger M, Badley J, Cabotaje PR, Jia R, Duan Z, Huang P, Stripp ST, Barlow CK, Belousoff M, Shafaat HS, Cook GM, Schittenhelm RB, Vincent KA, Khalid S, Berggren G, Greening C
Nature (2023) 615 pp. 541-547 [ Pubmed: 36890228 DOI: doi:10.1038/s41586-023-05781-7 ]
- Fe3-s4 cluster (295 Da, Ligand)
- Hydroxide ion (17 Da, Ligand)
- Nickel (iii) ion (58 Da, Ligand)
- Menadione (172 Da, Ligand)
- Carbonmonoxide-(dicyano) iron (135 Da, Ligand)
- Complex of the type 2 [nife]-hydrogenase huc from mycobacterium smegmatis (833 kDa, Complex from Mycolicibacterium smegmatis)
- Hydrogenase-2, small subunit (35 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Water (18 Da, Ligand)
- Hydrogenase-2, large subunit (57 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Magnesium ion (24 Da, Ligand)
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 7uus
Q-score: 0.104
Grinter R, Kropp A, Venugopal H, Senger M, Badley J, Cabotaje PR, Jia R, Duan Z, Huang P, Stripp ST, Barlow CK, Belousoff M, Shafaat HS, Cook GM, Schittenhelm RB, Vincent KA, Khalid S, Berggren G, Greening C
Nature (2023) 615 pp. 541-547 [ Pubmed: 36890228 DOI: doi:10.1038/s41586-023-05781-7 ]
- [nife]-hydrogenase huc membrane associated subunit (19 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Menaquinone-9 (785 Da, Ligand)
- Carbonmonoxide-(dicyano) iron (135 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Fe3-s4 cluster (295 Da, Ligand)
- Nickel (iii) ion (58 Da, Ligand)
- Hydrogenase-2, small subunit (39 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Complex of the type 2 [nife]-hydrogenase huc from mycobacterium smegmatis (833 kDa, Complex from Mycolicibacterium smegmatis MC2 155)
- Hydrogenase-2, large subunit (57 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Resolution: 1.52 Å
EM Method: Single-particle
Fitted PDBs: 8dqv
Q-score: 0.857
Grinter R, Kropp A, Venugopal H, Senger M, Badley J, Cabotaje PR, Jia R, Duan Z, Huang P, Stripp ST, Barlow CK, Belousoff M, Shafaat HS, Cook GM, Schittenhelm RB, Vincent KA, Khalid S, Berggren G, Greening C
Nature (2023) 615 pp. 541-547 [ Pubmed: 36890228 DOI: doi:10.1038/s41586-023-05781-7 ]
- Hydrogenase-2, large subunit (57 kDa, Protein from Mycolicibacterium smegmatis)
- Menadione (172 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Carbonmonoxide-(dicyano) iron (135 Da, Ligand)
- Fe3-s4 cluster (295 Da, Ligand)
- Hydrogenase-2, small subunit (35 kDa, Protein from Mycolicibacterium smegmatis)
- Nickel (iii) ion (58 Da, Ligand)
- Water (18 Da, Ligand)
- Complex of the type 2 [nife]-hydrogenase huc from mycobacterium smegmatis (833 kDa, Complex from Mycolicibacterium smegmatis)
- Oxygen atom (15 Da, Ligand)