Electron Microscopy Data Bank

EMD-45192

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Cryo-EM structure of PqqU with ligand PQQ

Release date: June 19, 2024
Resolution: 1.99 Å
EM Method: Single-particle
Fitted PDBs: 9c4o

Munder F, Voutsinos M, Hantke K, Venugopal H, Grinter R

To Be Published

Sample:

Water (18 Da, Ligand)
Pyrroloquinoline quinone (330 Da, Ligand)
Pyrroloquinoline quinone transporter (78 kDa, Protein from Escherichia coli BW25113)
Calcium ion (40 Da, Ligand)
Complex of pqqu with pqq (78 kDa, Complex from Escherichia coli BW25113)

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EMPIAR-11586

Release date: April 23, 2024
Dataset size: 37.6 GB
Experiment type: EMDB

Gervinskas G, Templin RM, Trepout S, Venugopal H, Ramm G

To Be Published

Image sets:

Raw tilt-series (movies not motionCored and tilts not aligned)

EMPIAR-11587

Release date: April 23, 2024
Dataset size: 31.8 GB
Experiment type: EMDB

Gervinskas G, Templin RM, Trepout S, Venugopal H, Ramm G

To Be Published

Image sets:

Raw tilt-series (movies not motionCored and tilts not aligned)

EMPIAR-11588

Release date: April 23, 2024
Dataset size: 38.5 GB
Experiment type: EMDB

Gervinskas G, Templin RM, Trepout S, Venugopal H, Ramm G

To Be Published

Image sets:

Raw tilt-series (movies not motionCored and tilts not aligned)

EMPIAR-11589

Release date: April 23, 2024
Dataset size: 27.6 GB
Experiment type: EMDB

Gervinskas G, Templin RM, Trepout S, Venugopal H, Ramm G

To Be Published

Image sets:

Raw tilt-series (movies not motionCored and tilts not aligned)

EMD-42023

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GPR3 Orphan G-coupled Protein Receptor in complex with Dominant Negative Gs.

Release date: March 6, 2024
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 8u8f
Q-score: 0.422

Russell IC, Zhang X, Bumbak F, McNeill SM, Josephs TM, Leeming MG, Christopoulos G, Venugopal H, Flocco MM, Sexton PM, Wootten D, Belousoff MJ

Biochemistry (2024) 63 pp. 625-631 [ DOI: doi:10.1021/acs.biochem.3c00647 Pubmed: 38376112 ]

Sample:

Active state, gpr3 complex with dominant negative g-alphas. (Complex from Homo sapiens)
Palmitic acid (256 Da, Ligand)
Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (6 kDa, Protein from Homo sapiens)
Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
Guanine nucleotide-binding protein g(s) subunit alpha isoforms short (45 kDa, Protein from Homo sapiens)
G-protein coupled receptor 3 (41 kDa, Protein from Homo sapiens)

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EMD-41138

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CryoEM structure of MFRV-VILP bound to IGF1Rzip

Release date: Jan. 17, 2024
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 8tan
Q-score: 0.424

Chrudinova M, Kirk NS, Chuard A, Venugopal H, Zhang F, Lubos M, Gelfanov V, Panikova T, Zakova L, Cutone J, Mojares M, DiMarchi R, Jiracek J, Altindis E

Mol Metab (2024) 80 pp. 101863-101863 [ DOI: doi:10.1016/j.molmet.2023.101863 Pubmed: 38182007 ]

Sample:

2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
1:2 complex of mfrv-vilp bound to igf1rzip (Complex)
Mfrv-vilp (Complex from Mandarin fish ranavirus)
Insulin-like growth factor 1 receptor (108 kDa, Protein from Homo sapiens)
Igf1rzip (Complex from Homo sapiens)
Insulin-like growth factor (6 kDa, Protein from Mandarin fish ranavirus)

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