The state 2 complex structure of Omicron spike with Bn03 (2-up RBD, 4 nanobodies)
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 7whi
Q-score: 0.377
Li C, Zhan W, Yang Z, Tu C, Hu G, Zhang X, Song W, Du S, Zhu Y, Huang K, Kong Y, Zhang M, Mao Q, Gu X, Zhang Y, Xie Y, Deng Q, Song Y, Chen Z, Lu L, Jiang S, Wu Y, Sun L, Ying T
Cell (2022) 185 pp. 1389-1401.e18 [ Pubmed: 35344711 DOI: doi:10.1016/j.cell.2022.03.009 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bn03_nano2 (13 kDa, Protein from Homo sapiens)
- Bn03_nano1 (14 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- The state 2 complex structure of omicron spike with bn03 (2-up rbd, 4 nanobodies) (Complex)
- Bn03 (Complex from Homo sapiens)
The state 1 complex structure of Omicron spike with Bn03 (1-up RBD, 3 nanobodies)
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 7whj
Q-score: 0.38
Li C, Zhan W, Yang Z, Tu C, Hu G, Zhang X, Song W, Du S, Zhu Y, Huang K, Kong Y, Zhang M, Mao Q, Gu X, Zhang Y, Xie Y, Deng Q, Song Y, Chen Z, Lu L, Jiang S, Wu Y, Sun L, Ying T
Cell (2022) 185 pp. 1389-1401.e18 [ Pubmed: 35344711 DOI: doi:10.1016/j.cell.2022.03.009 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- The state 1 complex structure of omicron spike with bn03 (1-up rbd, 3 nanobodies) (Complex)
- Bn03_nano2 (13 kDa, Protein from Homo sapiens)
- Bn03_nano1 (14 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Bn03 (Complex from Homo sapiens)
The state 3 complex structure of Omicron spike with Bn03 (2-up RBD, 5 nanobodies)
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 7whk
Q-score: 0.37
Li C, Zhan W, Yang Z, Tu C, Hu G, Zhang X, Song W, Du S, Zhu Y, Huang K, Kong Y, Zhang M, Mao Q, Gu X, Zhang Y, Xie Y, Deng Q, Song Y, Chen Z, Lu L, Jiang S, Wu Y, Sun L, Ying T
Cell (2022) 185 pp. 1389-1401.e18 [ Pubmed: 35344711 DOI: doi:10.1016/j.cell.2022.03.009 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bn03 (Complex from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Bn03_nano2 (13 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with bn03 (Complex)
- Bn03_nano1 (14 kDa, Protein from Homo sapiens)