Cryo-EM structure of bsAb3 Fab-Gn-Gc complex
Chang Z, Gao D, Liao L, Sun J, Zhang G, Zhang X, Wang F, Li C, Oladejo BO, Li S, Chai Y, Hu Y, Lu X, Xiao H, Qi J, Chen Z, Gao F, Wu Y
PNAS (2024) 121 pp. e2400163121-e2400163121 [ Pubmed: 38830098 DOI: doi:10.1073/pnas.2400163121 ]
- Bsab3 fab-light chain (35 kDa, Protein from Homo sapiens)
- Glycoprotein c (47 kDa, Protein from Dabie bandavirus)
- The structure of bsab3_gn_gc complex (Complex)
- Gn_gc (Complex from Dabie bandavirus)
- Glycoprotein n (35 kDa, Protein from Dabie bandavirus)
- Fab (Complex from Homo sapiens)
- Bsab3 fab-heavy chain (37 kDa, Protein from Homo sapiens)
Omicron spike variant BA.1 with Bn03
Resolution: 3.81 Å
EM Method: Single-particle
Fitted PDBs: 8i4h
Q-score: 0.201
Hao A, Song W, Li C, Zhang X, Tu C, Wang X, Wang P, Wu Y, Ying T, Sun L
Signal Transduct Target Ther (2023) 8 pp. 269-269 [ DOI: doi:10.1038/s41392-023-01534-0 Pubmed: 37422451 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Omicron ba.1 spike with bn03 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Bn03 (Complex)
- Ba.1 (Complex from Homo sapiens)
- Bn03 (27 kDa, Protein from Homo sapiens)
Omicron spike variant XBB with Bn03
Resolution: 3.98 Å
EM Method: Single-particle
Fitted PDBs: 8i4e
Q-score: 0.181
Hao A, Song W, Li C, Zhang X, Tu C, Wang X, Wang P, Wu Y, Ying T, Sun L
Signal Transduct Target Ther (2023) 8 pp. 269-269 [ DOI: doi:10.1038/s41392-023-01534-0 Pubmed: 37422451 ]
- Omicron spike with 6m6 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Bn03 (Complex)
- Xbb (Complex from Homo sapiens)
- Bn03 (27 kDa, Protein from Homo sapiens)
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Omicron spike variant XBB with n3130v-Fc
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8i4f
Q-score: 0.302
Hao A, Song W, Li C, Zhang X, Tu C, Wang X, Wang P, Wu Y, Ying T, Sun L
Signal Transduct Target Ther (2023) 8 pp. 269-269 [ Pubmed: 37422451 DOI: doi:10.1038/s41392-023-01534-0 ]
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 6m6 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Xbb (Complex from Homo sapiens)
- N3130v-fc (42 kDa, Protein from Homo sapiens)
- Bn03 (Complex)
Local CryoEM structure of the SARS-CoV-2 S6P in complex with 7B3 Fab
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8i3s
Q-score: 0.4
Liu Q, Zhao H, Li Z, Zhang Z, Huang R, Gu M, Zhuang K, Xiong Q, Chen X, Yu W, Qian S, Zhang Y, Tan X, Zhang M, Yu F, Guo M, Huang Z, Wang X, Xiang W, Wu B, Mei F, Cai K, Zhou L, Zhou L, Wu Y, Yan H, Cao S, Lan K, Chen Y
Signal Transduct Target Ther (2023) 8 pp. 347-347 [ DOI: doi:10.1038/s41392-023-01615-0 Pubmed: 37704615 ]
- Heavy chain od fab 7b3 (24 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike-fab complex (Complex from Homo sapiens)
- Light chain of fab 7b3 (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (137 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Local CryoEM structure of the SARS-CoV-2 S6P in complex with 14B1 Fab
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8i3u
Q-score: 0.462
Liu Q, Zhao H, Li Z, Zhang Z, Huang R, Gu M, Zhuang K, Xiong Q, Chen X, Yu W, Qian S, Zhang Y, Tan X, Zhang M, Yu F, Guo M, Huang Z, Wang X, Xiang W, Wu B, Mei F, Cai K, Zhou L, Zhou L, Wu Y, Yan H, Cao S, Lan K, Chen Y
Signal Transduct Target Ther (2023) 8 pp. 347-347 [ DOI: doi:10.1038/s41392-023-01615-0 Pubmed: 37704615 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Light chain of fab 14b1 (14 kDa, Protein from Homo sapiens)
- Heavy chain of fab 14b1 (16 kDa, Protein from Homo sapiens)
- Spike glycoprotein (137 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Spike-fab complex (Complex from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of the N-terminal domain of hMCM8/9 and HROB
Resolution: 3.95 Å
EM Method: Single-particle
Fitted PDBs: 7yox
Q-score: 0.245
Weng Z, Zheng J, Zhou Y, Lu Z, Wu Y, Xu D, Li H, Liang H, Liu Y
eLife (2023) 12 [ DOI: doi:10.7554/eLife.87468 Pubmed: 37535404 ]
- Dna helicase mcm9 (31 kDa, Protein from Homo sapiens)
- Minichromosome maintenance 8 and 9 (Complex from Homo sapiens)
- Dna helicase mcm8 (35 kDa, Protein from Homo sapiens)
SARS-CoV-2 S trimer in complex with 1F Fab
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7y7j
Q-score: 0.383
Zhao S, Liu F, Qiu S, Lan Q, Wu Y, Xu W, Ke J, Yang J, Liu X, Wang K, Guo H, Xia S, Zhang F, Wang J, Hu X, Lu L, Jiang S, Zhao S, Liu L, Xie Y, Yang X, Wang H, Zhong G
Protein Cell (2023) 14 pp. 74-78 [ DOI: doi:10.1093/procel/pwac042 Pubmed: 36726762 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 1f fab (Complex from Homo sapiens)
- Sars-cov-2 spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- 1f vl (11 kDa, Protein from Homo sapiens)
- 1f vh (14 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike glycoprotein complex with 1f fab (Complex)
SARS-CoV-2 RBD in complex with 1F Fab
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7y7k
Q-score: 0.241
Zhao S, Liu F, Qiu S, Lan Q, Wu Y, Xu W, Ke J, Yang J, Liu X, Wang K, Guo H, Xia S, Zhang F, Wang J, Hu X, Lu L, Jiang S, Zhao S, Liu L, Xie Y, Yang X, Wang H, Zhong G
Protein Cell (2023) 14 pp. 74-78 [ Pubmed: 36726762 DOI: doi:10.1093/procel/pwac042 ]
- Spike protein s1 (20 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 1f vl (11 kDa, Protein from Homo sapiens)
- 1f vh (14 kDa, Protein from Homo sapiens)
- 1f fab (Complex from Homo sapiens)
- Sars-cov-2 rbd complex with 1f fab (Complex)
- Sars-cov-2 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
Human menin in complex with H3K79Me2 nucleosome
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8gpn
Q-score: 0.459
Lin J, Wu Y, Tian G, Yu D, Yang E, Lam WH, Liu Z, Jing Y, Dang S, Bao X, Wong JWH, Zhai Y, Li XD
Science (2023) 379 pp. 717-723 [ Pubmed: 36795828 DOI: doi:10.1126/science.adc9318 ]
- Human menin in complex with nh3k79 dimethylated nucleosome (300 kDa, Complex from Xenopus laevis)
- Nh3k79 dimethylated nucleosome (Complex)
- Dna (177-mer) (Complex from Homo sapiens)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (177-mer) (54 kDa, DNA from Homo sapiens)
- Isoform 2 of menin (67 kDa, Protein from Homo sapiens)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna (177-mer) (54 kDa, DNA from Homo sapiens)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- Isoform 2 of menin (Complex)