Electron Microscopy Data Bank

EMD-36907

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Cryo-EM structure of the RC-LH core comples from Halorhodospira halochloris

Release date: May 22, 2024
Resolution: 2.42 Å
EM Method: Single-particle
Fitted PDBs: 8k5o

Qi CH, Wang GL, Wang FF, Wang J, Wang XP, Zou MJ, Ma F, Madigan MT, Kimura Y, Wang-Otomo ZY, Yu LJ

J Integr Plant Biol (2024) [ Pubmed: 38411333 DOI: doi:10.1111/jipb.13628 ]

Sample:

Unknown ligand (909 Da, Ligand)
2-o-octyl-beta-d-glucopyranose (292 Da, Ligand)
Cardiolipin (1 kDa, Ligand)
Antenna complex alpha/beta subunit domain-containing protein (7 kDa, Protein from Halorhodospira halochloris)
Reaction center protein m chain (36 kDa, Protein from Halorhodospira halochloris)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Reactin center small polypeptide (3 kDa, Protein from Halorhodospira halochloris)
Reaction center protein l chain (31 kDa, Protein from Halorhodospira halochloris)
Di-palmitoyl-3-sn-phosphatidylethanolamine (691 Da, Ligand)
Beta subunit of light-harvesting 1 (9 kDa, Protein from Halorhodospira halochloris)
Gamma subunit of light-harvesting 1 (3 kDa, Protein from Halorhodospira halochloris)
Heme c (618 Da, Ligand)
Ubiquinone-8 (727 Da, Ligand)
Menaquinone 8 (717 Da, Ligand)
Trans-geranyl bacteriopheophytin b (885 Da, Ligand)
Antenna complex alpha/beta subunit domain-containing protein (12 kDa, Protein from Halorhodospira halochloris)
Rc-lh core complex (Complex from Halorhodospira halochloris)
Lycopene (536 Da, Ligand)
Light-harvesting lhi (7 kDa, Protein from Halorhodospira halochloris)
Fe (iii) ion (55 Da, Ligand)
Trans-geranyl 8-vinyl-bacteriochlorophyll b (907 Da, Ligand)
Reaction center small polypeptide (3 kDa, Protein from Halorhodospira halochloris)
Trans-geranyl bacteriochlorophyll b (907 Da, Ligand)
Photosynthetic reaction center h subunit (31 kDa, Protein from Halorhodospira halochloris)
(1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
Photosynthetic reaction center cytochrome c subunit (41 kDa, Protein from Halorhodospira halochloris)

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