Electron Microscopy Data Bank

EMD-36604

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Structure of human full-length E6AP

Release date: June 5, 2024
Resolution: 5.1 Å
EM Method: Single-particle
Fitted PDBs: 8jrs

Wang Z, Fan F, Li Z, Ye F, Wang Q, Gao R, Qiu J, Lv Y, Lin M, Xu W, Luo C, Yu X

Nat Commun (2024) 15 pp. 3531-3531 [ Pubmed: 38670961 DOI: doi:10.1038/s41467-024-47586-w ]

Sample:

E6ap (Complex from Homo sapiens)
Ubiquitin-protein ligase e3a (100 kDa, Protein from Homo sapiens)

EMD-34694

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C1 portal vertex in HCMV A-capsid

Release date: April 26, 2023
Resolution: 5.1 Å
EM Method: Single-particle

Li Z, Pang J, Gao R, Wang Q, Zhang M, Yu X

Nat Commun (2023) 14 pp. 2025-2025 [ DOI: doi:10.1038/s41467-023-37779-0 Pubmed: 37041152 ]

Sample:

Human betaherpesvirus 5 (Virus from Human betaherpesvirus 5)

EMD-34701

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C5 portal vertex in NIEPs capsid of HCMV

Release date: April 26, 2023
Resolution: 5.0 Å
EM Method: Single-particle

Li Z, Pang J, Gao R, Wang Q, Zhang M, Yu X

Nat Commun (2023) 14 pp. 2025-2025 [ DOI: doi:10.1038/s41467-023-37779-0 Pubmed: 37041152 ]

Sample:

Human betaherpesvirus 5 (Virus from Human betaherpesvirus 5)

EMD-31290

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Human Cytomegalovirus, the reconstruction of C1 portal vertex in the enveloped capsid

Release date: July 14, 2021
Resolution: 5.5 Å
EM Method: Single-particle

Li Z, Pang J, Dong L, Yu X

Nat Commun (2021) 12 pp. 4538-4538 [ DOI: doi:10.1038/s41467-021-24820-3 Pubmed: 34315863 ]

Sample:

Human betaherpesvirus 5 (Virus from Human betaherpesvirus 5)

EMD-31299

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C6 portal vertex in the enveloped virion capsid

Release date: July 14, 2021
Resolution: 5.9 Å
EM Method: Single-particle
Fitted PDBs: 7etm
Q-score: 0.186

Li Z, Pang J, Dong L, Yu X

Nat Commun (2021) 12 pp. 4538-4538 [ DOI: doi:10.1038/s41467-021-24820-3 Pubmed: 34315863 ]

Sample:

Portal protein (78 kDa, Protein from Human cytomegalovirus)
Human betaherpesvirus 5 (Virus from Human betaherpesvirus 5)

EMD-31300

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Human Cytomegalovirus, C6 reconstruction of the portal vertex in partially-enveloped capsid

Release date: July 14, 2021
Resolution: 5.3 Å
EM Method: Single-particle

Li Z, Pang J, Dong L, Yu X

Nat Commun (2021) 12 pp. 4538-4538 [ DOI: doi:10.1038/s41467-021-24820-3 Pubmed: 34315863 ]

Sample:

Human betaherpesvirus 5 (Virus from Human betaherpesvirus 5)

EMD-30156

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Epstein-Barr virus, C1 portal vertex reconstruction

Release date: Sept. 30, 2020
Resolution: 5.5 Å
EM Method: Single-particle

Li Z, Zhang X, Dong L, Pang J, Xu M, Zhong Q, Zeng MS, Yu X

Cell Res (2020) 30 pp. 873-884 [ Pubmed: 32620850 DOI: doi:10.1038/s41422-020-0363-0 ]

Sample:

Human gammaherpesvirus 4 (Virus from Human gammaherpesvirus 4)

EMD-10135

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CryoEM structure of murine perforin-2 ectodomain in a pore form

Release date: Feb. 5, 2020
Resolution: 5.0 Å
EM Method: Single-particle
Fitted PDBs: 6sb5
Q-score: 0.152

Ni T, Jiao F, Yu X, Aden S, Ginger L, Williams SI, Bai F, Prazak V, Karia D, Stansfeld P, Zhang P, Munson G, Anderluh G, Scheuring S, Gilbert RJC

Sci Adv (2020) 6 pp. eaax8286-eaax8286 [ Pubmed: 32064340 DOI: doi:10.1126/sciadv.aax8286 ]

Sample:

Macrophage-expressed gene 1 protein (71 kDa, Protein from Mus musculus)
2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Murine perforin-2 ecto domain (Complex from Mus musculus)

EMD-0448

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F-pilus/MS2 complex (Class 2 map with genome masked out)

Release date: July 24, 2019
Resolution: 5.6 Å
EM Method: Single-particle

Meng R, Jiang M, Cui Z, Chang JY, Yang K, Jakana J, Yu X, Wang Z, Hu B, Zhang J

Nat Commun (2019) 10 pp. 3130-3130 [ Pubmed: 31311931 DOI: doi:10.1038/s41467-019-11126-8 ]

Sample:

F-plius (Complex from Escherichia coli)
F-pilus/ms2 complex (Complex)
Enterobacteria phage ms2 (Complex from Enterobacteria phage MS2)

EMD-0453

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F-pilus/MS2 complex (all particles map with genome masked out)

Release date: July 24, 2019
Resolution: 5.0 Å
EM Method: Single-particle

Meng R, Jiang M, Cui Z, Chang JY, Yang K, Jakana J, Yu X, Wang Z, Hu B, Zhang J

Nat Commun (2019) 10 pp. 3130-3130 [ Pubmed: 31311931 DOI: doi:10.1038/s41467-019-11126-8 ]

Sample:

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