Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8uej
Q-score: 0.449
Wang Y, Theodore M, Xing Z, Narsaria U, Yu Z, Zeng L, Zhang J
Sci Adv (2024) 10 pp. eadl4450-eadl4450 [ Pubmed: 38701202 DOI: doi:10.1126/sciadv.adl4450 ]
- Maturation protein (40 kDa, Protein from Caulobacter phage phiCb5)
- A complex of phicb5 maturation protein and phicb5 shell (2 MDa, Complex from Caulobacter vibrioides)
- Coat protein (13 kDa, Protein from Caulobacter phage phiCb5)
- Calcium ion (40 Da, Ligand)
Cryo-EM structure of the EfPiwi (N959K)-piRNA-target ternary complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7yfq
Q-score: 0.435
Li Z, Li Z, Zhang Y, Zhou L, Xu Q, Li L, Zeng L, Xue J, Niu H, Zhong J, Yu Q, Li D, Gui M, Huang Y, Tu S, Zhang Z, Song CQ, Wu J, Shen EZ
Nat Struct Mol Biol (2024) [ Pubmed: 38658622 DOI: doi:10.1038/s41594-024-01287-6 ]
- Pirna (7 kDa, RNA from Homo sapiens)
- Piwi (92 kDa, Protein from Ephydatia fluviatilis)
- Rna (5'-r(*up*cp*cp*ap*up*gp*up*up*gp*ap*up*gp*gp*up*ap*a)-3') (5 kDa, RNA from Homo sapiens)
- Rna (Complex)
- Efpiwi(n959k)-pirna-16nt target (Complex)
- Efpiwi(n959k) (Complex from Ephydatia fluviatilis)
- Magnesium ion (24 Da, Ligand)
Cryo-EM structure of Hili in complex with piRNA
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7yfx
Q-score: 0.425
Li Z, Li Z, Zhang Y, Zhou L, Xu Q, Li L, Zeng L, Xue J, Niu H, Zhong J, Yu Q, Li D, Gui M, Huang Y, Tu S, Zhang Z, Song CQ, Wu J, Shen EZ
Nat Struct Mol Biol (2024) [ Pubmed: 38658622 DOI: doi:10.1038/s41594-024-01287-6 ]
- Pirna (Complex)
- Magnesium ion (24 Da, Ligand)
- Pirna (8 kDa, RNA from Homo sapiens)
- Piwi-like protein 2 (114 kDa, Protein from Homo sapiens)
- Hili-pirna (Complex)
- Hili (Complex from Homo sapiens)
Cryo-EM structure of the Mili-piRNA- target ternary complex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7yfy
Q-score: 0.406
Li Z, Li Z, Zhang Y, Zhou L, Xu Q, Li L, Zeng L, Xue J, Niu H, Zhong J, Yu Q, Li D, Gui M, Huang Y, Tu S, Zhang Z, Song CQ, Wu J, Shen EZ
Nat Struct Mol Biol (2024) [ Pubmed: 38658622 DOI: doi:10.1038/s41594-024-01287-6 ]
- Mili (Complex from Mus musculus)
- Magnesium ion (24 Da, Ligand)
- Piwi-like protein 2 (91 kDa, Protein from Mus musculus)
- Rna (Complex)
- Pirna (8 kDa, RNA from Homo sapiens)
- Rna (5'-r(p*cp*cp*ap*up*gp*up*up*gp*ap*up*gp*gp*up*ap*a)-3') (4 kDa, RNA from Homo sapiens)
- Mili-pirna-15nt target (Complex)
Cryo-EM structure of the EfPiwi(N959K) in complex with piRNA
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7yg6
Q-score: 0.399
Li Z, Li Z, Zhang Y, Zhou L, Xu Q, Li L, Zeng L, Xue J, Niu H, Zhong J, Yu Q, Li D, Gui M, Huang Y, Tu S, Zhang Z, Song CQ, Wu J, Shen EZ
Nat Struct Mol Biol (2024) [ Pubmed: 38658622 DOI: doi:10.1038/s41594-024-01287-6 ]
- Pirna (7 kDa, RNA from Homo sapiens)
- Piwi (92 kDa, Protein from Ephydatia fluviatilis)
- Pirna (Complex)
- Efpiwi(n959k) (Complex from Ephydatia fluviatilis)
- Magnesium ion (24 Da, Ligand)
- Efpiwi(n959k)-pirna (Complex)
Cryo-EM structure of the Mili in complex with piRNA
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7ygn
Q-score: 0.5
Li Z, Li Z, Zhang Y, Zhou L, Xu Q, Li L, Zeng L, Xue J, Niu H, Zhong J, Yu Q, Li D, Gui M, Huang Y, Tu S, Zhang Z, Song CQ, Wu J, Shen EZ
Nat Struct Mol Biol (2024) [ Pubmed: 38658622 DOI: doi:10.1038/s41594-024-01287-6 ]
- Pirna (8 kDa, RNA from Homo sapiens)
- Mili-pirna (Complex)
- Mili (Complex from Mus musculus)
- Pirna (Complex)
- Magnesium ion (24 Da, Ligand)
- Piwi-like protein 2 (91 kDa, Protein from Mus musculus)
Structure of hSLC19A1+3'3'-CDA
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7xq0
Q-score: 0.558
Zhang Q, Zhang X, Zhu Y, Sun P, Zhang L, Ma J, Zhang Y, Zeng L, Nie X, Gao Y, Li Z, Liu S, Lou J, Gao A, Zhang L, Gao P
Nature (2022) 612 pp. 170-176 [ DOI: doi:10.1038/s41586-022-05452-z Pubmed: 36265513 ]
- (2r,3r,3as,5r,7ar,9r,10r,10as,12r,14ar)-2,9-bis(6-amino-9h-purin-9-yl)octahydro-2h,7h-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide (658 Da, Ligand)
- Slc19a1+3'3'-cda (Complex from Homo sapiens)
- Reduced folate transporter (60 kDa, Protein from Homo sapiens)
Structure of hSLC19A1+2'3'-CDAS
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7xq1
Q-score: 0.502
Zhang Q, Zhang X, Zhu Y, Sun P, Zhang L, Ma J, Zhang Y, Zeng L, Nie X, Gao Y, Li Z, Liu S, Lou J, Gao A, Zhang L, Gao P
Nature (2022) 612 pp. 170-176 [ Pubmed: 36265513 DOI: doi:10.1038/s41586-022-05452-z ]
- (1~{r},3~{s},6~{r},8~{r},9~{r},10~{s},12~{s},15~{r},17~{r},18~{r})-8,17-bis(6-aminopurin-9-yl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecane-9,18-diol (690 Da, Ligand)
- Slc19a1+2'3'-cdas (Complex from Homo sapiens)
- Reduced folate transporter (60 kDa, Protein from Homo sapiens)
Structure of hSLC19A1+2'3'-cGAMP
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7xq2
Q-score: 0.538
Zhang Q, Zhang X, Zhu Y, Sun P, Zhang L, Ma J, Zhang Y, Zeng L, Nie X, Gao Y, Li Z, Liu S, Lou J, Gao A, Zhang L, Gao P
Nature (2022) 612 pp. 170-176 [ Pubmed: 36265513 DOI: doi:10.1038/s41586-022-05452-z ]
- Cgamp (674 Da, Ligand)
- Slc19a1+2'3'-cgamp (Complex from Homo sapiens)
- Reduced folate transporter (60 kDa, Protein from Homo sapiens)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8goe
Q-score: 0.581