Cryo-EM structures of Helicobacter pylori vacuolating cytotoxin A (VacA) oligomeric assemblies
Zhang K, Zhang H, Li S, Pintilie GD, Mou TC, Gao Y, Zhang Q, van den Bedem H, Schmid MF, Au SWN, Chiu W
Proc Natl Acad Sci U S A (2019) 116 pp. 6800-6805 [ DOI: 10.1073/pnas.1821959116 Pubmed: 30894496 ]
Image sets:
Type I-F CRISPR-Csy complex with its inhibitor AcrF9
Resolution: 2.57 Å
EM Method: Single-particle
Fitted PDBs: 6vqv
Q-score: 0.495
Zhang K, Wang S, Li S, Zhu Y, Pintilie GD, Mou TC, Schmid MF, Huang Z, Chiu W
PNAS (2020) 117 pp. 7176-7182 [ DOI: doi:10.1073/pnas.1922638117 Pubmed: 32170016 ]
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa)
- Crispr-associated protein csy3 (39 kDa, Protein from Pseudomonas aeruginosa)
- Acrf9 (7 kDa, Protein from Pseudomonas aeruginosa)
- Crrna (60-mer) (19 kDa, RNA from Pseudomonas aeruginosa)
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa)
- Type i-f crispr-csy complex with its inhibitor acrf9 (350 kDa, Complex from Pseudomonas aeruginosa)
- Crispr-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa)
Type I-F CRISPR-Csy complex with its inhibitor AcrF8
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 6vqw
Q-score: 0.462
Zhang K, Wang S, Li S, Zhu Y, Pintilie GD, Mou TC, Schmid MF, Huang Z, Chiu W
PNAS (2020) 117 pp. 7176-7182 [ DOI: doi:10.1073/pnas.1922638117 Pubmed: 32170016 ]
- Crrna (40-mer) (19 kDa, RNA from Pseudomonas aeruginosa)
- Acrf8 (10 kDa, Protein from Pseudomonas aeruginosa)
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa)
- Crispr-associated protein csy3 (39 kDa, Protein from Pseudomonas aeruginosa)
- Type i-f crispr-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa)
- Type i-f crispr-csy complex with its inhibitor acrf8 (350 kDa, Complex from Pseudomonas aeruginosa)
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa)
Type I-F CRISPR-Csy complex with its inhibitor AcrF6
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 6vqx
Q-score: 0.433
Zhang K, Wang S, Li S, Zhu Y, Pintilie GD, Mou TC, Schmid MF, Huang Z, Chiu W
PNAS (2020) 117 pp. 7176-7182 [ DOI: doi:10.1073/pnas.1922638117 Pubmed: 32170016 ]
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa)
- Acrf6 (10 kDa, Protein from Pseudomonas aeruginosa)
- Type i-f crispr-csy complex with its inhibitor acrf6 (350 kDa, Complex from Pseudomonas aeruginosa)
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa)
- Crrna (60-mer) (19 kDa, RNA from Pseudomonas aeruginosa)
- Crispr-associated protein csy3 (39 kDa, Protein from Pseudomonas aeruginosa)
- Type i-f crispr-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6ues
Q-score: 0.359
Zhang K, Li S, Kappel K, Pintilie G, Su Z, Mou TC, Schmid MF, Das R, Chiu W
Nat Commun (2019) 10 pp. 5511-5511 [ DOI: doi:10.1038/s41467-019-13494-7 Pubmed: 31796736 ]
- Apo sam-iv riboswitch (Complex from Helicobacter pylori)
- Rna (119-mer) (38 kDa, RNA from Mycobacterium sp. MCS)
- Apo sam-iv riboswitch (40 kDa, Complex from Helicobacter pylori)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6uet
Q-score: 0.343
Zhang K, Li S, Kappel K, Pintilie G, Su Z, Mou TC, Schmid MF, Das R, Chiu W
Nat Commun (2019) 10 pp. 5511-5511 [ DOI: doi:10.1038/s41467-019-13494-7 Pubmed: 31796736 ]
- Rna (119-mer) (38 kDa, RNA from Mycobacterium sp. MCS)
- Sam-bound sam-iv riboswitch (40 kDa, Complex from Helicobacter pylori)
- Sam-bound sam-iv riboswitch (Complex from Helicobacter pylori)
- S-adenosylmethionine (398 Da, Ligand)
Helicobacter pylori Vacuolating Cytotoxin A Oligomeric Assembly 1 (OA-1)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6nyf
Q-score: 0.437
Zhang K, Zhang H, Li S, Pintilie GD, Mou TC, Gao Y, Zhang Q, van den Bedem H, Schmid MF, Au SWN, Chiu W
PNAS (2019) 116 pp. 6800-6805 [ DOI: doi:10.1073/pnas.1821959116 Pubmed: 30894496 ]
Helicobacter pylori Vacuolating Cytotoxin A Oligomeric Assembly 2a (OA-2a)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6nyg
Q-score: 0.28
Zhang K, Zhang H, Li S, Pintilie GD, Mou TC, Gao Y, Zhang Q, van den Bedem H, Schmid MF, Au SWN, Chiu W
PNAS (2019) 116 pp. 6800-6805 [ DOI: doi:10.1073/pnas.1821959116 Pubmed: 30894496 ]
Helicobacter pylori Vacuolating Cytotoxin A Oligomeric Assembly 2b (OA-2b)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6nyj
Q-score: 0.411
Zhang K, Zhang H, Li S, Pintilie GD, Mou TC, Gao Y, Zhang Q, van den Bedem H, Schmid MF, Au SWN, Chiu W
PNAS (2019) 116 pp. 6800-6805 [ DOI: doi:10.1073/pnas.1821959116 Pubmed: 30894496 ]
Helicobacter pylori Vacuolating Cytotoxin A Oligomeric Assembly 2c (OA-2c)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6nyl
Q-score: 0.33
Zhang K, Zhang H, Li S, Pintilie GD, Mou TC, Gao Y, Zhang Q, van den Bedem H, Schmid MF, Au SWN, Chiu W
PNAS (2019) 116 pp. 6800-6805 [ DOI: doi:10.1073/pnas.1821959116 Pubmed: 30894496 ]