Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6ues
Q-score: 0.359
Zhang K, Li S, Kappel K, Pintilie G, Su Z, Mou TC, Schmid MF, Das R, Chiu W
Nat Commun (2019) 10 pp. 5511-5511 [ DOI: doi:10.1038/s41467-019-13494-7 Pubmed: 31796736 ]
- Apo sam-iv riboswitch (Complex from Helicobacter pylori)
- Rna (119-mer) (38 kDa, RNA from Mycobacterium sp. MCS)
- Apo sam-iv riboswitch (40 kDa, Complex from Helicobacter pylori)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6uet
Q-score: 0.343
Zhang K, Li S, Kappel K, Pintilie G, Su Z, Mou TC, Schmid MF, Das R, Chiu W
Nat Commun (2019) 10 pp. 5511-5511 [ DOI: doi:10.1038/s41467-019-13494-7 Pubmed: 31796736 ]
- Rna (119-mer) (38 kDa, RNA from Mycobacterium sp. MCS)
- Sam-bound sam-iv riboswitch (40 kDa, Complex from Helicobacter pylori)
- Sam-bound sam-iv riboswitch (Complex from Helicobacter pylori)
- S-adenosylmethionine (398 Da, Ligand)
cryoEM structure of the truncated HIV-1 Vif/CBFbeta/A3F complex
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6nil
Q-score: 0.383
Hu Y, Desimmie BA, Nguyen HC, Ziegler SJ, Cheng TC, Chen J, Wang J, Wang H, Zhang K, Pathak VK, Xiong Y
Nat Struct Mol Biol (2019) 26 pp. 1176-1183 [ DOI: doi:10.1038/s41594-019-0343-6 Pubmed: 31792451 ]
- Virion infectivity factor (16 kDa, Protein from Human immunodeficiency virus 1)
- Zinc ion (65 Da, Ligand)
- Dna dc->du-editing enzyme apobec-3f (24 kDa, Protein from Homo sapiens)
- 6xhis tagged ha3fctd-40aa-hcbfbeta fusion (Complex from Homo sapiens)
- Alpha domain truncated hiv-1 vif (Complex from Human immunodeficiency virus 1)
- Core-binding factor subunit beta (17 kDa, Protein from Homo sapiens)
- Truncated vif/cbfbeta/a3fctd complex (17 kDa, Complex from Human immunodeficiency virus 1)
CryoEM reconstruction of the full HIV-1 Vif/CBFbeta/A3F complex
Hu Y, Desimmie BA, Nguyen HC, Ziegler SJ, Cheng TC, Chen J, Wang J, Wang H, Zhang K, Pathak VK, Xiong Y
Nat Struct Mol Biol (2019) 26 pp. 1176-1183 [ DOI: doi:10.1038/s41594-019-0343-6 Pubmed: 31792451 ]
- Hiv-1 virion infectivity factor (vif) (Protein from Human immunodeficiency virus 1)
- Human core-binding factor beta (cbfbeta) (Protein from Homo sapiens)
- Vif/cbfbeta/a3fctd complex (250 kDa, Complex from Homo sapiens)
- Core-binding factor beta (cbfbeta) (Complex from Human immunodeficiency virus 1)
- Apobec3f c-terminal domain (ha3fctd) (Complex from Homo sapiens)
- Human apobec3f c-terminal domain (ha3fctd) (Protein from Homo sapiens)
- Hiv-1 virion infectivity factor (vif) (Complex)
Resolution: 2.37 Å
EM Method: Single-particle
Fitted PDBs: 6k61
Q-score: 0.65
Zheng L, Li Y, Li X, Zhong Q, Li N, Zhang K, Zhang Y, Chu H, Ma C, Li G, Zhao J, Gao N
Nat Plants (2019) 5 pp. 1087-1097 [ Pubmed: 31595062 DOI: doi:10.1038/s41477-019-0525-6 ]
- Photosystem i complex of cyanobacterium anabaena sp. pcc 7120 (1 MDa, Cellular component from Nostoc sp. PCC 7120)
- Phylloquinone (450 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 1 (83 kDa, Protein from Nostoc sp. PCC 7120)
- Chlorophyll a isomer (893 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit viii (5 kDa, Protein from Nostoc sp. PCC 7120)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Nostoc sp. PCC 7120)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i 4.8 kda protein (4 kDa, Protein from Nostoc sp. PCC 7120)
- Photosystem i reaction center subunit psak 1 (8 kDa, Protein from Nostoc sp. PCC 7120)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Nostoc sp. PCC 7120)
- Photosystem i reaction center subunit iii (17 kDa, Protein from Nostoc sp. PCC 7120)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Nostoc sp. PCC 7120)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit xi (18 kDa, Protein from Nostoc sp. PCC 7120)
- Photosystem i iron-sulfur center (8 kDa, Protein from Nostoc sp. PCC 7120)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Nostoc sp. PCC 7120)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Nostoc sp. PCC 7120)
Human apoferritin at 1.75 Angstrom
Pintilie G, Zhang K, Su Z, Li S, Schmid MF, Chiu W
Nat Methods (2020) 17 pp. 328-334 [ DOI: doi:10.1038/s41592-020-0731-1 Pubmed: 32042190 ]
- Human apoferritin (480 kDa, Complex from Homo sapiens)
Human apoferritin at 2.32 Angstrom
Pintilie G, Zhang K, Su Z, Li S, Schmid MF, Chiu W
Nat Methods (2020) 17 pp. 328-334 [ DOI: doi:10.1038/s41592-020-0731-1 Pubmed: 32042190 ]
- Human apoferritin (480 kDa, Complex from Homo sapiens)
Human apoferritin at 3.08 Angstrom
Pintilie G, Zhang K, Su Z, Li S, Schmid MF, Chiu W
Nat Methods (2020) 17 pp. 328-334 [ DOI: doi:10.1038/s41592-020-0731-1 Pubmed: 32042190 ]
- Human apoferritin (480 kDa, Complex from Homo sapiens)
Flagellar cap protein FiD on hook tip from FlaB deletion mutant of B. burgdorferi
Calcarisporiella thermophila Hsp104
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6d00
Q-score: 0.232
Michalska K, Zhang K, March ZM, Hatzos-Skintges C, Pintilie G, Bigelow L, Castellano LM, Miles LJ, Jackrel ME, Chuang E, Jedrzejczak R, Shorter J, Chiu W, Joachimiak A
Structure (2019) 27 pp. 449-463.e7 [ DOI: doi:10.1016/j.str.2018.11.001 Pubmed: 30595457 ]
- Calcarisporiella thermophila hsp104 (98 kDa, Protein from Calcarisporiella thermophila)
- Calcarisporiella thermophila hsp104 with adp (600 kDa, Complex from Calcarisporiella thermophila)
- Adenosine-5'-diphosphate (427 Da, Ligand)