Cytochrome c-type biogenesis protein CcmABCD from E. coli
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 7f02
Q-score: 0.491
Li J, Zheng W, Gu M, Han L, Luo Y, Yu K, Sun M, Zong Y, Ma X, Liu B, Lowder EP, Mendez DL, Kranz RG, Zhang K, Zhu J
Nat Commun (2022) 13 pp. 6422-6422 [ DOI: doi:10.1038/s41467-022-34136-5 Pubmed: 36307425 ]
- Cytochrome c-type biogenesis protein ccmabcd (130 kDa, Complex from Escherichia coli BL21(DE3))
- Magnesium ion (24 Da, Ligand)
- Cytochrome c biogenesis atp-binding export protein ccma (23 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein d (7 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein c (27 kDa, Protein from Escherichia coli BL21(DE3))
- Phosphate ion (94 Da, Ligand)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Heme exporter protein b (23 kDa, Protein from Escherichia coli BL21(DE3))
Cytochrome c-type biogenesis protein CcmABCD from E. coli in complex with ANP
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 7f03
Q-score: 0.498
Li J, Zheng W, Gu M, Han L, Luo Y, Yu K, Sun M, Zong Y, Ma X, Liu B, Lowder EP, Mendez DL, Kranz RG, Zhang K, Zhu J
Nat Commun (2022) 13 pp. 6422-6422 [ DOI: doi:10.1038/s41467-022-34136-5 Pubmed: 36307425 ]
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Heme exporter protein c (27 kDa, Protein from Escherichia coli BL21(DE3))
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Heme exporter protein b (23 kDa, Protein from Escherichia coli BL21(DE3))
- Water (18 Da, Ligand)
- Cytochrome c biogenesis atp-binding export protein ccma (23 kDa, Protein from Escherichia coli BL21(DE3))
- Magnesium ion (24 Da, Ligand)
- Cytochrome c-type biogenesis protein ccmabcd (130 kDa, Complex from Escherichia coli BL21(DE3))
- Heme exporter protein d (7 kDa, Protein from Escherichia coli BL21(DE3))
Cytochrome c-type biogenesis protein CcmABCD from E. coli in complex with Heme and ATP.
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 7f04
Q-score: 0.561
Li J, Zheng W, Gu M, Han L, Luo Y, Yu K, Sun M, Zong Y, Ma X, Liu B, Lowder EP, Mendez DL, Kranz RG, Zhang K, Zhu J
Nat Commun (2022) 13 pp. 6422-6422 [ DOI: doi:10.1038/s41467-022-34136-5 Pubmed: 36307425 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Cytochrome c-type biogenesis protein ccmabcd (130 kDa, Complex from Escherichia coli BL21(DE3))
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Cytochrome c biogenesis atp-binding export protein ccma (23 kDa, Protein from Escherichia coli BL21(DE3))
- Water (18 Da, Ligand)
- Heme exporter protein d (7 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein c (27 kDa, Protein from Escherichia coli BL21(DE3))
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Heme exporter protein b (23 kDa, Protein from Escherichia coli BL21(DE3))
Cytochrome c-type biogenesis protein CcmABCD
Resolution: 3.98 Å
EM Method: Single-particle
Fitted PDBs: 7vfj
Q-score: 0.323
Li J, Zheng W, Gu M, Han L, Luo Y, Yu K, Sun M, Zong Y, Ma X, Liu B, Lowder EP, Mendez DL, Kranz RG, Zhang K, Zhu J
Nat Commun (2022) 13 pp. 6422-6422 [ Pubmed: 36307425 DOI: doi:10.1038/s41467-022-34136-5 ]
- The cytochrome c maturation complex ccmabcd. (130 kDa, Complex from Escherichia coli BL21(DE3))
- Heme exporter protein d (7 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein b (23 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein c (27 kDa, Protein from Escherichia coli BL21(DE3))
- Cytochrome c biogenesis atp-binding export protein ccma (23 kDa, Protein from Escherichia coli BL21(DE3))
Cytochrome c-type biogenesis protein CcmABCD from E. coli in complex with heme and single ATP
Resolution: 4.03 Å
EM Method: Single-particle
Fitted PDBs: 7vfp
Q-score: 0.31
Li J, Zheng W, Gu M, Han L, Luo Y, Yu K, Sun M, Zong Y, Ma X, Liu B, Lowder EP, Mendez DL, Kranz RG, Zhang K, Zhu J
Nat Commun (2022) 13 pp. 6422-6422 [ Pubmed: 36307425 DOI: doi:10.1038/s41467-022-34136-5 ]
- Water (18 Da, Ligand)
- Heme exporter protein d (7 kDa, Protein from Escherichia coli BL21(DE3))
- Magnesium ion (24 Da, Ligand)
- Cytochrome c biogenesis atp-binding export protein ccma (22 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein b (23 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein c (27 kDa, Protein from Escherichia coli BL21(DE3))
- The cytochrome c maturation complex ccmabcd (130 kDa, Complex from Escherichia coli BL21(DE3))
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
structure of C2 projections and MIPs
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7n61
Q-score: 0.405
Han L, Rao Q, Yang R, Wang Y, Chai P, Xiong Y, Zhang K
Nat Struct Mol Biol (2022) 29 pp. 472-482 [ DOI: doi:10.1038/s41594-022-00769-9 Pubmed: 35578022 ]
- Fap147 (102 kDa, Protein from Chlamydomonas reinhardtii)
- Unassigned protein-1 (14 kDa, Protein from Chlamydomonas reinhardtii)
- Fap178 (23 kDa, Protein from Chlamydomonas reinhardtii)
- Fap213 (22 kDa, Protein from Chlamydomonas reinhardtii)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Fap239 (57 kDa, Protein from Chlamydomonas reinhardtii)
- Tubulin alpha (49 kDa, Protein from Chlamydomonas reinhardtii)
- Fap70 (111 kDa, Protein from Chlamydomonas reinhardtii)
- Fap196 (64 kDa, Protein from Chlamydomonas reinhardtii)
- Unassigned protein-2 (14 kDa, Protein from Chlamydomonas reinhardtii)
- Unassigned protein-3 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Structure of c2 projections and mips (Complex from Chlamydomonas reinhardtii)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Unassigned protein-5 (7 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar wd repeat-containing protein pf20 (65 kDa, Protein from Chlamydomonas reinhardtii)
- Fap65 (233 kDa, Protein from Chlamydomonas reinhardtii)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Kinesin-like protein (83 kDa, Protein from Chlamydomonas reinhardtii)
- Unassigned protein-6 (14 kDa, Protein from Chlamydomonas reinhardtii)
- Tubulin beta (49 kDa, Protein from Chlamydomonas reinhardtii)
- Unassigned protein-4 (3 kDa, Protein from Chlamydomonas reinhardtii)
- Fap225 (81 kDa, Protein from Chlamydomonas reinhardtii)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7n6g
Q-score: 0.318
Han L, Rao Q, Yang R, Wang Y, Chai P, Xiong Y, Zhang K
Nat Struct Mol Biol (2022) 29 pp. 472-482 [ DOI: doi:10.1038/s41594-022-00769-9 Pubmed: 35578022 ]
- Fap227 (19 kDa, Protein from Chlamydomonas reinhardtii)
- Pf16 (54 kDa, Protein from Chlamydomonas reinhardtii)
- Fap76 (172 kDa, Protein from Chlamydomonas reinhardtii)
- Fap279 (43 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (4 kDa, Protein from Chlamydomonas smithii)
- Fap101 (85 kDa, Protein from Chlamydomonas reinhardtii)
- Fap69 (114 kDa, Protein from Chlamydomonas reinhardtii)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Fap7 (54 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (9 kDa, Protein from Chlamydomonas smithii)
- Hydin (425 kDa, Protein from Chlamydomonas reinhardtii)
- Fap47 (319 kDa, Protein from Chlamydomonas reinhardtii)
- Tubulin beta (49 kDa, Protein from Chlamydomonas reinhardtii)
- Pf6 (237 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (15 kDa, Protein from Chlamydomonas smithii)
- Unknown protein (7 kDa, Protein from Chlamydomonas smithii)
- Fap194 (57 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (9 kDa, Protein from Chlamydomonas smithii)
- Fap42 (269 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (4 kDa, Protein from Chlamydomonas smithii)
- Unknown protein (5 kDa, Protein from Chlamydomonas smithii)
- Fap15 (34 kDa, Protein from Chlamydomonas reinhardtii)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Unknown protein (14 kDa, Protein from Chlamydomonas smithii)
- Fap305 (47 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (16 kDa, Protein from Chlamydomonas smithii)
- C1 microtubule and its associated projection of central pair (Complex from Chlamydomonas reinhardtii)
- Fap275 (18 kDa, Protein from Chlamydomonas reinhardtii)
- Fap360 (80 kDa, Protein from Chlamydomonas reinhardtii)
- Fap81 (234 kDa, Protein from Chlamydomonas reinhardtii)
- Fap54 (332 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (9 kDa, Protein from Chlamydomonas smithii)
- Calmodulin (18 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (8 kDa, Protein from Chlamydomonas smithii)
- Unknown protein (3 kDa, Protein from Chlamydomonas smithii)
- Unknown protein (4 kDa, Protein from Chlamydomonas smithii)
- Hth_9 domain-containing protein (109 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (11 kDa, Protein from Chlamydomonas smithii)
- Fap216 (79 kDa, Protein from Chlamydomonas reinhardtii)
- Dpy30 (11 kDa, Protein from Chlamydomonas reinhardtii)
- Heat shock protein 70a (71 kDa, Protein from Chlamydomonas reinhardtii)
- Fap46 (289 kDa, Protein from Chlamydomonas reinhardtii)
- Fap74 (204 kDa, Protein from Chlamydomonas reinhardtii)
- Fap108 (47 kDa, Protein from Chlamydomonas reinhardtii)
- Cpc1 (205 kDa, Protein from Chlamydomonas reinhardtii)
- Fap289 (46 kDa, Protein from Chlamydomonas reinhardtii)
- Tubulin alpha (49 kDa, Protein from Chlamydomonas reinhardtii)
- Fap92 (153 kDa, Protein from Chlamydomonas reinhardtii)
- Fap99 (90 kDa, Protein from Chlamydomonas reinhardtii)
- Fap246 (120 kDa, Protein from Chlamydomonas reinhardtii)
- Phosphopyruvate hydratase (51 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (1 kDa, Protein from Chlamydomonas smithii)
- Fap114 (31 kDa, Protein from Chlamydomonas reinhardtii)
- Fap119 (33 kDa, Protein from Chlamydomonas reinhardtii)
- Fap297 (99 kDa, Protein from Chlamydomonas reinhardtii)
Li J, Han L, Vallese F, Ding Z, Choi SK, Hong S, Luo Y, Liu B, Chan CK, Tajkhorshid E, Zhu J, Clarke O, Zhang K, Gennis R
PNAS (2021) 118 [ Pubmed: 34417297 DOI: doi:10.1073/pnas.2106750118 ]
- Cytochrome bo(3) ubiquinol oxidase subunit 1 (Macromolecule from Escherichia coli 536)
- Cytochrome bo(3) ubiquinol oxidase subunit 4 (Macromolecule from Escherichia coli 536)
- Cytochrome bo(3) ubiquinol oxidase (140 kDa, Complex from Escherichia coli 536)
- Cytochrome bo(3) ubiquinol oxidase subunit 3 (Macromolecule from Escherichia coli 536)
- Cytochrome bo(3) ubiquinol oxidase subunit 2 (Macromolecule from Escherichia coli 536)