Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 8k0c
Q-score: 0.397
Fan P, Sun M, Zhang X, Zhang H, Liu Y, Yao Y, Li M, Fang T, Sun B, Chen Z, Chi X, Chen L, Peng C, Chen Z, Zhang G, Ren Y, Liu Z, Li Y, Li J, Li E, Guan W, Li S, Gong R, Zhang K, Yu C, Chiu S
Nat Commun (2024) 15 pp. 4330-4330 [ Pubmed: 38773072 DOI: doi:10.1038/s41467-024-48601-w ]
- Light chain of 1e5 fab fragments (23 kDa, Protein from Macaca mulatta)
- Cryo-em structure of conformation 1 of complex of nipah virus attachment glycoprotein g with 1e5 neutralizing antibody (Complex from Nipah virus)
- Heavy chain of 1e5 fab fragments (26 kDa, Protein from Macaca mulatta)
- Glycoprotein g (6 kDa, Protein from Nipah virus)
- Glycoprotein g (56 kDa, Protein from Nipah virus)
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 8k0d
Q-score: 0.461
Fan P, Sun M, Zhang X, Zhang H, Liu Y, Yao Y, Li M, Fang T, Sun B, Chen Z, Chi X, Chen L, Peng C, Chen Z, Zhang G, Ren Y, Liu Z, Li Y, Li J, Li E, Guan W, Li S, Gong R, Zhang K, Yu C, Chiu S
Nat Commun (2024) 15 pp. 4330-4330 [ Pubmed: 38773072 DOI: doi:10.1038/s41467-024-48601-w ]
- Glycoprotein g (45 kDa, Protein from Nipah virus)
- The light chain of 1e5 (23 kDa, Protein from Macaca mulatta)
- The heavy chain of 1e5 (26 kDa, Protein from Macaca mulatta)
- Cryo-em structure of conformation 2 of complex of nipah virus attachment g with 1e5 neutralizing antibody (Complex from Nipah virus)
Nipah virus Attachment glycoprotein with 41-6 antibody fragment
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 8k3c
Q-score: 0.44
Chen L, Sun M, Zhang H, Zhang X, Yao Y, Li M, Li K, Fan P, Zhang H, Qin Y, Zhang Z, Li E, Chen Z, Guan W, Li S, Yu C, Zhang K, Gong R, Chiu S
Nat Commun (2024) 15 pp. 2987-2987 [ DOI: doi:10.1038/s41467-024-47213-8 Pubmed: 38582870 ]
- Heavy chain of 41-6 fab fragments (25 kDa, Protein from Homo sapiens)
- Light chain of 41-6 fab fragment (22 kDa, Protein from Homo sapiens)
- Cryo-em structure of complex of attachment glycoprotein g with 41-6 fab fragment (Complex from Henipavirus nipahense)
- Glycoprotein g (52 kDa, Protein from Henipavirus nipahense)
Cryo-EM structure of PAO1-ImcA with GMPCPP
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8wcn
Q-score: 0.362
Zhan X, Zhang K, Wang C, Fan Q, Tang X, Zhang X, Wang K, Fu Y, Liang H
Nat Commun (2024) 15 pp. 1860-1860 [ Pubmed: 38424057 DOI: doi:10.1038/s41467-024-46149-3 ]
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Ggdef domain-containing protein (Complex from Pseudomonas aeruginosa)
- Diguanylate cyclase (51 kDa, Protein from Pseudomonas aeruginosa)
Cryo-EM structure of Tetrahymena ribozyme conformation 1 undergoing the first-step self-splicing
Resolution: 4.14 Å
EM Method: Single-particle
Fitted PDBs: 7yc8
Q-score: 0.261
Zhang X, Li S, Pintilie G, Palo MZ, Zhang K
Nucleic Acids Res (2023) 51 pp. 1317-1325 [ Pubmed: 36660826 DOI: doi:10.1093/nar/gkac1268 ]
- Cryo-em structure of tetrahymena ribozyme conformation 1 undergoing the first-step self-splicing (130 kDa, Complex from Tetrahymena)
- Rna (388-mer) (127 kDa, RNA from Tetrahymena)
- Guanosine-5'-triphosphate (523 Da, Ligand)
Cryo-EM structure of Tetrahymena ribozyme conformation 2 undergoing the first-step self-splicing
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 7ycg
Q-score: 0.359
Zhang X, Li S, Pintilie G, Palo MZ, Zhang K
Nucleic Acids Res (2023) 51 pp. 1317-1325 [ DOI: doi:10.1093/nar/gkac1268 Pubmed: 36660826 ]
- Cryo-em structure of tetrahymena ribozyme conformation 2 undergoing the first-step self-splicing (130 kDa, Complex from Tetrahymena)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Rna (5'-r(*cp*cp*cp*up*cp*up*ap*ap*ap*cp*c)-3') (3 kDa, RNA from Tetrahymena)
- Rna (393-mer) (127 kDa, RNA from Tetrahymena)
Cryo-EM structure of Tetrahymena ribozyme conformation 3 undergoing the first-step self-splicing
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 7ych
Q-score: 0.373
Zhang X, Li S, Pintilie G, Palo MZ, Zhang K
Nucleic Acids Res (2023) 51 pp. 1317-1325 [ Pubmed: 36660826 DOI: doi:10.1093/nar/gkac1268 ]
- Magnesium ion (24 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Rna (393-mer) (127 kDa, RNA from Tetrahymena)
- Cryo-em structure of tetrahymena ribozyme conformation 3 undergoing the first-step self-splicing (130 kDa, Complex from Tetrahymena)
- Rna (5'-r(*cp*cp*cp*up*cp*up*ap*ap*ap*cp*c)-3') (3 kDa, RNA from Tetrahymena)
Cryo-EM structure of Tetrahymena ribozyme conformation 4 undergoing the first-step self-splicing
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 7yci
Q-score: 0.387
Zhang X, Li S, Pintilie G, Palo MZ, Zhang K
Nucleic Acids Res (2023) 51 pp. 1317-1325 [ DOI: doi:10.1093/nar/gkac1268 Pubmed: 36660826 ]
- Rna (5'-r(*cp*cp*cp*up*cp*u)-3') (1 kDa, RNA from Tetrahymena)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Rna (389-mer) (127 kDa, RNA from Tetrahymena)
- Cryo-em structure of tetrahymena ribozyme conformation 4 undergoing the first-step self-splicing (130 kDa, Complex from Tetrahymena)
Cryo-EM structure of Tetrahymena ribozyme conformation 5 undergoing the second-step self-splicing
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 7yg8
Q-score: 0.419
Li S, Palo MZ, Zhang X, Pintilie G, Zhang K
Nat Commun (2023) 14 pp. 1294-1294 [ Pubmed: 36928031 DOI: doi:10.1038/s41467-023-36724-5 ]
- Rna (5'-r(*cp*cp*cp*up*c)-3') (1 kDa, RNA from Tetrahymena)
- Magnesium ion (24 Da, Ligand)
- Cryo-em structure of tetrahymena ribozyme conformation 5 undergoing the second-step self-splicing (130 kDa, Complex from Tetrahymena)
- Rna (5'-r(*up*cp*g)-3') (911 Da, RNA from Tetrahymena)
- Rna (387-mer) (127 kDa, RNA from Tetrahymena)
Cryo-EM structure of Tetrahymena ribozyme conformation 1 undergoing the second-step self-splicing
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 7yg9
Q-score: 0.487
Li S, Palo MZ, Zhang X, Pintilie G, Zhang K
Nat Commun (2023) 14 pp. 1294-1294 [ Pubmed: 36928031 DOI: doi:10.1038/s41467-023-36724-5 ]
- Rna (5'-r(*up*cp*gp*(ssu)p*ap*ap*c)-3') (2 kDa, RNA from Tetrahymena)
- Cryo-em structure of tetrahymena ribozyme conformation 1 undergoing the second-step self-splicing (130 kDa, Complex from Tetrahymena)
- Rna (391-mer) (127 kDa, RNA from Tetrahymena)
- Magnesium ion (24 Da, Ligand)
- Rna (5'-r(*cp*cp*cp*up*cp*u)-3') (1 kDa, RNA from Tetrahymena)