Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8j75
Q-score: 0.398
Human high-affinity choline transporter CHT1 in the inward-facing apo-open conformation
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8j76
Q-score: 0.395
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8j77
Q-score: 0.42
Qiu Y, Gao Y, Huang B, Bai Q, Zhao Y
Nat Struct Mol Biol (2024) 31 pp. 701-709 [ DOI: doi:10.1038/s41594-024-01259-w Pubmed: 38589607 ]
- Human high-affinity choline transporter 1 (Complex from Homo sapiens)
- High affinity choline transporter 1 (63 kDa, Protein from Homo sapiens)
- Choline ion (104 Da, Ligand)
human glycine transporter 1 in complex with glycine in occluded conformation
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 8wfi
Q-score: 0.644
Wei Y, Li R, Meng Y, Hu T, Zhao J, Gao Y, Bai Q, Li N, Zhao Y
Cell (2024) 187 pp. 1719- [ Pubmed: 38513663 DOI: doi:10.1016/j.cell.2024.02.026 ]
- Isoform glyt-1b of sodium- and chloride-dependent glycine transporter 1 (63 kDa, Protein from Homo sapiens)
- Human glycine transporter 1 (glyt1) (Complex from Homo sapiens)
- Chloride ion (35 Da, Ligand)
- Water (18 Da, Ligand)
- Glycine (75 Da, Ligand)
- Sodium ion (22 Da, Ligand)
human glycine transporter 1 in complex with ALX-5407 in inward facing conformation
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 8wfj
Q-score: 0.479
Wei Y, Li R, Meng Y, Hu T, Zhao J, Gao Y, Bai Q, Li N, Zhao Y
Cell (2024) 187 pp. 1719- [ DOI: doi:10.1016/j.cell.2024.02.026 Pubmed: 38513663 ]
- Alx5407 (393 Da, Ligand)
- Sodium- and chloride-dependent glycine transporter 1 (72 kDa, Protein from Homo sapiens)
- Human glycine transporter 1 (Complex from Homo sapiens)
human glycine transporter 1 in complex with SSR504734 in outward facing conformation
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 8wfk
Q-score: 0.542
Wei Y, Li R, Meng Y, Hu T, Zhao J, Gao Y, Bai Q, Li N, Zhao Y
Cell (2024) 187 pp. 1719- [ Pubmed: 38513663 DOI: doi:10.1016/j.cell.2024.02.026 ]
- Sodium- and chloride-dependent glycine transporter 1 (72 kDa, Protein from Homo sapiens)
- Chloride ion (35 Da, Ligand)
- Ssr504734 (396 Da, Ligand)
- Human glycine transporter 1 (Complex from Homo sapiens)
- Sodium ion (22 Da, Ligand)
human glycine transporter 1 in complex with PF-03463275 in outward facing conformation
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 8wfl
Q-score: 0.47
Wei Y, Li R, Meng Y, Hu T, Zhao J, Gao Y, Bai Q, Li N, Zhao Y
Cell (2024) 187 pp. 1719- [ DOI: doi:10.1016/j.cell.2024.02.026 Pubmed: 38513663 ]
- Pf-3463275 (376 Da, Ligand)
- Sodium- and chloride-dependent glycine transporter 1 (72 kDa, Protein from Homo sapiens)
- Human glycine transporter 1 (Complex from Homo sapiens)
Cryo-EM structure of SARS-CoV-2 BA.2 RBD in complex with BA7535 fab (local refinement)
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 8h7z
Q-score: 0.461
Wang Y, Yan A, Song D, Duan M, Dong C, Chen J, Jiang Z, Gao Y, Rao M, Feng J, Zhang Z, Qi R, Ma X, Liu H, Yu B, Wang Q, Zong M, Jiao J, Xing P, Pan R, Li D, Xiao J, Sun J, Li Y, Zhang L, Shen Z, Sun B, Zhao Y, Zhang L, Dai J, Zhao J, Wang L, Dou C, Liu Z, Zhao J
Nat Commun (2024) 15 pp. 842-842 [ Pubmed: 38287016 DOI: doi:10.1038/s41467-024-45050-3 ]
- Ba7535 fab (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Cryo-em structure of sars-cov-2 ba.2 rbd in complex with ba7535 fab (local refinement) (Complex from Severe acute respiratory syndrome coronavirus 2)
- Ba7535 fab (49 kDa, Protein from Homo sapiens)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7f9w
Q-score: 0.492
Song D, Liu X, Dong C, Wang Q, Sha C, Liu C, Ning Z, Han J, Liu H, Zong M, Zhao Y, Li Y, Liu G, Shao X, Dou C
Sci Rep (2021) 11 pp. 22966-22966 [ DOI: doi:10.1038/s41598-021-02449-y Pubmed: 34824364 ]
- Fab (Complex from Homo sapiens)
- Cd25 (Complex from Homo sapiens)
- Light chain of fab (24 kDa, Protein from Homo sapiens)
- Heavy chain of fab (49 kDa, Protein from Homo sapiens)
- Interleukin-2 receptor subunit alpha (18 kDa, Protein from Homo sapiens)
- Cd25 in complex with fab (Complex)
Methanococcus maripaludis chaperonin, open conformation 1
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7r9e
Q-score: 0.233
Zhao Y, Schmid MF, Frydman J, Chiu W
Nat Commun (2021) 12 pp. 4754-4754 [ DOI: doi:10.1038/s41467-021-25099-0 Pubmed: 34362932 ]
- Chaperonin (54 kDa, Protein from Methanococcus maripaludis)
- Mmcpn (1 MDa, Complex from Methanococcus maripaludis)