Resolution: 3.99 Å
EM Method: Single-particle
Fitted PDBs: 7suk
Q-score: 0.314
Zhao Y, Rai J, Xu C, He H, Li H
Commun Biol (2022) 5 pp. 523-523 [ Pubmed: 35650250 DOI: doi:10.1038/s42003-022-03500-y ]
- Krr1 small subunit processome component (20 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s16-a (13 kDa, Protein from Saccharomyces cerevisiae)
- Ribonucloprotein (13 kDa, Protein from Saccharomyces cerevisiae)
- Ribosome biogenesis protein utp30 (28 kDa, Protein from Saccharomyces cerevisiae)
- Structure of bfr2-lcp5 complex observed in the small subunit processome isolated from r2tp-depleted yeast cells (Complex from Saccharomyces cerevisiae)
- 18s pre-rrna (582 kDa, RNA from Saccharomyces cerevisiae)
- Regulator of rdna transcription protein 14 (10 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s24-a (10 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s28-a (7 kDa, Protein from Saccharomyces cerevisiae)
- U3 small nucleolar ribonucleoprotein protein imp3 (21 kDa, Protein from Saccharomyces cerevisiae)
- Protein bfr2 (61 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae)
- U3 small nucleolar rna-associated protein 4 (84 kDa, Protein from Saccharomyces cerevisiae)
- Ribosomal rna small subunit methyltransferase nep1 (26 kDa, Protein from Saccharomyces cerevisiae)
- U3 small nucleolar rna-associated protein 8 (77 kDa, Protein from Saccharomyces cerevisiae)
- U3 small nucleolar rna-associated protein 13 (90 kDa, Protein from Saccharomyces cerevisiae)
- Rrna biogenesis protein rrp5 (30 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s6-a (25 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae)
- Something about silencing protein 10 (20 kDa, Protein from Saccharomyces cerevisiae)
- Rna 3'-terminal phosphate cyclase-like protein (39 kDa, Protein from Saccharomyces cerevisiae)
- U3 small nucleolar rna-associated protein 11 (29 kDa, Protein from Saccharomyces cerevisiae)
- U3 small nucleolar rna-associated protein 18 (66 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s18-a (14 kDa, Protein from Saccharomyces cerevisiae)
- U3 small nucleolar ribonucleoprotein protein lcp5 (40 kDa, Protein from Saccharomyces cerevisiae)
- Net1-associated nuclear protein 1 (100 kDa, Protein from Saccharomyces cerevisiae)
- Pre-rrna-processing protein pno1 (20 kDa, Protein from Saccharomyces cerevisiae)
- U3 small nucleolar rna-associated protein mpp10 (28 kDa, Protein from Saccharomyces cerevisiae)
- Nucleolar protein 58 (47 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s4-a (25 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s9-a (20 kDa, Protein from Saccharomyces cerevisiae)
- Rrp9 isoform 1 (52 kDa, Protein from Saccharomyces cerevisiae)
- Bud site selection protein 21 (7 kDa, Protein from Saccharomyces cerevisiae)
- U3 small nucleolar rna-associated protein 20 (278 kDa, Protein from Saccharomyces cerevisiae)
- U3 small nucleolar rna-associated protein 12 (104 kDa, Protein from Saccharomyces cerevisiae)
- Nucleolar protein 56 (45 kDa, Protein from Saccharomyces cerevisiae)
- Ribosomal rna-processing protein 7 (21 kDa, Protein from Saccharomyces cerevisiae)
- Nucleolar complex protein 14 (89 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s14-b (11 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae)
- 5' ets (225 kDa, RNA from Saccharomyces cerevisiae)
- U3 small nucleolar rna-associated protein 15 (57 kDa, Protein from Saccharomyces cerevisiae)
- Rna cytidine acetyltransferase (104 kDa, Protein from Saccharomyces cerevisiae)
- U3 small nucleolar rna-associated protein 6 (46 kDa, Protein from Saccharomyces cerevisiae)
- U3 small nucleolar rna-associated protein 9 (13 kDa, Protein from Saccharomyces cerevisiae)
- U3 snorna (106 kDa, RNA from Saccharomyces cerevisiae)
- U3 small nucleolar rna-associated protein 10 (49 kDa, Protein from Saccharomyces cerevisiae)
- U3 small nucleolar rna-associated protein 7 (48 kDa, Protein from Saccharomyces cerevisiae)
- U3 small nucleolar rna-associated protein 22 (130 kDa, Protein from Saccharomyces cerevisiae)
- Protein sof1 (53 kDa, Protein from Saccharomyces cerevisiae)
- Protein faf1 (27 kDa, Protein from Saccharomyces cerevisiae)
- Ribosome biogenesis protein bms1 (127 kDa, Protein from Saccharomyces cerevisiae)
- Rrna-processing protein fcf1 (21 kDa, Protein from Saccharomyces cerevisiae)
- U3 small nucleolar rna-associated protein 14 (21 kDa, Protein from Saccharomyces cerevisiae)
- Rrna-processing protein fcf2 (20 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s13 (14 kDa, Protein from Saccharomyces cerevisiae)
- Rrna 2'-o-methyltransferase fibrillarin (27 kDa, Protein from Saccharomyces cerevisiae)
- U3 small nucleolar ribonucleoprotein protein imp4 (33 kDa, Protein from Saccharomyces cerevisiae)
- Essential nuclear protein 1 (29 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s22-a (14 kDa, Protein from Saccharomyces cerevisiae)
- U3 small nucleolar rna-associated protein 21 (102 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s5 (23 kDa, Protein from Saccharomyces cerevisiae)
- Nucleolar complex protein 4 (59 kDa, Protein from Saccharomyces cerevisiae)
- Ribosome biogenesis protein enp2 (41 kDa, Protein from Saccharomyces cerevisiae)
- Periodic tryptophan protein 2 (96 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s23-a (11 kDa, Protein from Saccharomyces cerevisiae)
- U3 small nucleolar rna-associated protein 5 (62 kDa, Protein from Saccharomyces cerevisiae)
SARS-CoV-2 spike in complex with the CA521 neutralizing antibody (focused map)
SARS-CoV-2 spike in complex with the CA521 neutralizing antibody (consensus map)
SARS-CoV-2 spike in complex with the CA521 neutralizing antibody Fab (focused refinement on Fab-RBD)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7e23
Q-score: 0.487
Song D, Wang W, Dong C, Ning Z, Liu X, Liu C, Du G, Sha C, Wang K, Lu J, Sun B, Zhao Y, Wang Q, Xu H, Li Y, Shen Z, Jiao J, Wang R, Tian J, Liu W, Wang L, Deng YQ, Dou C
Commun Biol (2021) 4 pp. 500-500 [ DOI: doi:10.1038/s42003-021-02029-w Pubmed: 33893388 ]
- Spike protein s1 2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Ca521 heavy chain (49 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ca521 heavy chain (Complex from Homo sapiens)
- Ca521 light chain (Complex from Homo sapiens)
- Ca521 light chain (23 kDa, Protein from Homo sapiens)
- Ca521 fab-rbd sub-complex (Complex)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike in complex with the CA521 neutralizing antibody Fab (consensus map)