EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"(1S,2R,3S,4R,5S,6S)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL 2-AMINO-4-{[CARBOXY(IMINO)METHYL]AMINO}-2,3,4,6-TETRADEOXY-ALPHA-D-ARABINO-HEXOPYRANOSIDE"

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EMD-16612

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Kasugamycin bound to the 30S body

Release date: July 19, 2023
Resolution: 2.04 Å
EM Method: Single-particle
Fitted PDBs: 8cep
Q-score: 0.734

Paternoga H, Crowe-McAuliffe C, Bock LV, Koller TO, Morici M, Beckert B, Myasnikov AG, Grubmuller H, Novacek J, Wilson DN

Nat Struct Mol Biol (2023) 30 pp. 1380-1392 [ Pubmed: 37550453 DOI: doi:10.1038/s41594-023-01047-y ]

Sample:

Potassium ion (39 Da, Ligand)
Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli BW25113)
Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli BW25113)
Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli BW25113)
Magnesium ion (24 Da, Ligand)
Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli BW25113)
Capreomycin ia (686 Da, Protein from Streptomyces californicus)
Small ribosomal subunit protein bs18 (9 kDa, Protein from Escherichia coli BW25113)
(1s,2r,3s,4r,5s,6s)-2,3,4,5,6-pentahydroxycyclohexyl 2-amino-4-{[carboxy(imino)methyl]amino}-2,3,4,6-tetradeoxy-alpha-d-arabino-hexopyranoside (379 Da, Ligand)
Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli BW25113)
Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli BW25113)
23s rrna (941 kDa, RNA from Escherichia coli BW25113)
70s ribosomes with antibiotic cocktail (Complex from Escherichia coli BW25113)
16s rrna (499 kDa, RNA from Escherichia coli BW25113)
Small ribosomal subunit protein bs6, non-modified isoform (15 kDa, Protein from Escherichia coli BW25113)
Small ribosomal subunit protein bs21 (8 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli BW25113)
Small ribosomal subunit protein us4 (23 kDa, Protein from Escherichia coli BW25113)
Water (18 Da, Ligand)

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