Grimm C, Jungwirth S, Fischer U
To Be Published
- Mrna-capping enzyme regulatory subunit opg124 (33 kDa, Protein from Vaccinia virus)
- Vaccinia dna-directed rna polymerase open promoter intermediate pre-initiation complex (750 kDa, Complex)
- Dna-directed rna polymerase 18 kda subunit (17 kDa, Protein from Vaccinia virus)
- Intermediate transcription factor 3 small subunit (33 kDa, Protein from Vaccinia virus)
- Dna-directed rna polymerase 133 kda polypeptide (133 kDa, Protein from Vaccinia virus)
- Vaccinia dna-directed rna polymerase open promoter intermediate pre-initiation complex (Complex from Vaccinia virus)
- Dna-directed rna polymerase 147 kda polypeptide (146 kDa, Protein from Vaccinia virus)
- Dna-directed rna polymerase 22 kda subunit (21 kDa, Protein from Vaccinia virus)
- Template dna oligomer (21 kDa, DNA from Vaccinia virus)
- Dna-directed rna polymerase 7 kda subunit (7 kDa, Protein from Vaccinia virus)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase 30 kda polypeptide (29 kDa, Protein from Vaccinia virus)
- Intermediate transcription factor 3 large subunit (44 kDa, Protein from Vaccinia virus)
- Dna-directed rna polymerase 19 kda subunit (19 kDa, Protein from Vaccinia virus)
- Non-template dna oligomer and template dna oligomer (Complex from Vaccinia virus)
- Water (18 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase 35 kda subunit (35 kDa, Protein from Vaccinia virus)
- Non-template dna oligomer (21 kDa, DNA from Vaccinia virus)
- Mrna-capping enzyme catalytic subunit (96 kDa, Protein from Vaccinia virus)
Grimm C, Jungwirth S, Fischer U
To Be Published
- Dna-directed rna polymerase 35 kda subunit (35 kDa, Protein from Vaccinia virus)
- Dna-directed rna polymerase 133 kda polypeptide (133 kDa, Protein from Vaccinia virus)
- Magnesium ion (24 Da, Ligand)
- Vaccinia dna-directed rna polymerase open promoter intermediate pre-initiation complex (750 kDa, Complex)
- Dna-directed rna polymerase 22 kda subunit (21 kDa, Protein from Vaccinia virus)
- Intermediate transcription factor 3 large subunit (44 kDa, Protein from Vaccinia virus)
- Dna-directed rna polymerase 7 kda subunit (7 kDa, Protein from Vaccinia virus)
- Mrna-capping enzyme catalytic subunit (96 kDa, Protein from Vaccinia virus)
- Vaccinia dna-directed rna polymerase open promoter intermediate pre-initiation complex (Complex from Vaccinia virus)
- Dna-directed rna polymerase 18 kda subunit (17 kDa, Protein from Vaccinia virus)
- Intermediate transcription factor 3 small subunit (33 kDa, Protein from Vaccinia virus)
- Dna-directed rna polymerase 19 kda subunit (19 kDa, Protein from Vaccinia virus)
- Template dna oligomer (21 kDa, DNA from Vaccinia virus)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase 147 kda polypeptide (146 kDa, Protein from Vaccinia virus)
- Dna-directed rna polymerase 30 kda polypeptide (29 kDa, Protein from Vaccinia virus)
- Template dna oligomer (Complex from Vaccinia virus)
- Non-template dna oligomer (21 kDa, DNA from Vaccinia virus)
Grimm C, Jungwirth S, Fischer U
To Be Published
- Dna-directed rna polymerase 35 kda subunit (35 kDa, Protein from Vaccinia virus)
- Dna-directed rna polymerase 133 kda polypeptide (133 kDa, Protein from Vaccinia virus)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase 22 kda subunit (21 kDa, Protein from Vaccinia virus)
- Intermediate transcription factor 3 large subunit (44 kDa, Protein from Vaccinia virus)
- Dna-directed rna polymerase 7 kda subunit (7 kDa, Protein from Vaccinia virus)
- Mrna-capping enzyme regulatory subunit opg124 (33 kDa, Protein from Vaccinia virus)
- Mrna-capping enzyme catalytic subunit (96 kDa, Protein from Vaccinia virus)
- Dna-directed rna polymerase 18 kda subunit (17 kDa, Protein from Vaccinia virus)
- Intermediate transcription factor 3 small subunit (33 kDa, Protein from Vaccinia virus)
- Dna-directed rna polymerase 19 kda subunit (19 kDa, Protein from Vaccinia virus)
- Template dna oligomer (21 kDa, DNA from Vaccinia virus)
- Zinc ion (65 Da, Ligand)
- Vaccinia dna-directed rna polymerase open promoter intermediate pre-initiation complex (750 kDa, Complex from Vaccinia virus)
- Dna-directed rna polymerase 30 kda polypeptide (29 kDa, Protein from Vaccinia virus)
- Dna-directed rna polymerase 147 kda polypeptide (146 kDa, Protein from Vaccinia virus)
- Non-template dna oligomer (21 kDa, DNA from Vaccinia virus)
Cryo EM structure of the vaccinia complete RNA polymerase complex lacking the capping enzyme
Resolution: 3.84 Å
EM Method: Single-particle
Fitted PDBs: 8c8h
Q-score: 0.333
To Be Published
- Early transcription factor 82 kda subunit (82 kDa, Protein from Vaccinia virus GLV-1h68)
- Core protein e11 (14 kDa, Protein from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 133 kda polypeptide (133 kDa, Protein from Vaccinia virus GLV-1h68)
- Chr17.trna16-glnttg (23 kDa, RNA from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 19 kda subunit (19 kDa, Protein from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 35 kda subunit (35 kDa, Protein from Vaccinia virus GLV-1h68)
- Rna polymerase-associated transcription-specificity factor rap94 (93 kDa, Protein from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 30 kda polypeptide (30 kDa, Protein from Vaccinia virus GLV-1h68)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase 7 kda subunit (7 kDa, Protein from Vaccinia virus GLV-1h68)
- Vaccinia complete rna polymerase complex lacking the capping enzyme (700 kDa, Complex from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 147 kda polypeptide (146 kDa, Protein from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 18 kda subunit (17 kDa, Protein from Vaccinia virus GLV-1h68)
- Nucleoside triphosphatase i (72 kDa, Protein from Vaccinia virus GLV-1h68)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase 22 kda subunit (21 kDa, Protein from Vaccinia virus GLV-1h68)
- Water (18 Da, Ligand)
96-nm repeat unit of doublet microtubules from Chlamydomonas reinhardtii flagella
Walton T, Gui M, Velkova S, Fassad MR, Hirst RA, Haarman E, O'Callaghan C, Bottier M, Burgoyne T, Mitchison HM, Brown A
Nature (2023) 618 pp. 625-633 [ Pubmed: 37258679 DOI: doi:10.1038/s41586-023-06140-2 ]
- Flagellar associated protein (177 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein light chain 9 (12 kDa, Protein from Chlamydomonas reinhardtii)
- Duf4201 domain-containing protein (55 kDa, Protein from Chlamydomonas reinhardtii)
- Ic140 (109 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar associated protein (42 kDa, Protein from Chlamydomonas reinhardtii)
- Subunit of axonemal inner dynein (40 kDa, Protein from Chlamydomonas reinhardtii)
- Fap339 (10 kDa, Protein from Chlamydomonas reinhardtii)
- Fap129 (51 kDa, Protein from Chlamydomonas reinhardtii)
- Fap21 (49 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein regulatory complex subunit 2 (64 kDa, Protein from Chlamydomonas reinhardtii)
- Inner arm dynein light chain (13 kDa, Protein from Chlamydomonas reinhardtii)
- Aaa+ atpase domain-containing protein (523 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar outer dynein arm light chain 2 (15 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein 16 kda light chain, flagellar outer arm (17 kDa, Protein from Chlamydomonas reinhardtii)
- Fap207 (28 kDa, Protein from Chlamydomonas reinhardtii)
- Aaa+ atpase domain-containing protein (468 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein gamma chain, flagellar outer arm (513 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar associated protein (35 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein light chain tctex1 (12 kDa, Protein from Chlamydomonas reinhardtii)
- Wd_repeats_region domain-containing protein (146 kDa, Protein from Chlamydomonas reinhardtii)
- Calmodulin (18 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein 14 kda light chain, flagellar outer arm (14 kDa, Protein from Chlamydomonas reinhardtii)
- Cfap91 domain-containing protein (134 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar associated protein (25 kDa, Protein from Chlamydomonas reinhardtii)
- Radial spoke protein 4 (49 kDa, Protein from Chlamydomonas reinhardtii)
- Cilia- and flagella-associated protein 53 (56 kDa, Protein from Chlamydomonas reinhardtii)
- Cilia- and flagella-associated protein 100 (65 kDa, Protein from Chlamydomonas reinhardtii)
- Nucleoside diphosphate kinase (41 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar associated protein (15 kDa, Protein from Chlamydomonas reinhardtii)
- Radial spoke protein 14 (40 kDa, Protein from Chlamydomonas reinhardtii)
- Fap306 (20 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein regulatory complex protein 8 (18 kDa, Protein from Chlamydomonas reinhardtii)
- Tubulin alpha (49 kDa, Protein from Chlamydomonas reinhardtii)
- Drc5 (43 kDa, Protein from Chlamydomonas reinhardtii)
- Dhc2 (467 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein 8 kda light chain, flagellar outer arm (10 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar associated protein (25 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar radial spoke protein 6 (48 kDa, Protein from Chlamydomonas reinhardtii)
- Aaa+ atpase domain-containing protein (478 kDa, Protein from Chlamydomonas reinhardtii)
- Protein flattop homolog (15 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar outer dynein arm heavy chain beta (520 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein-1-beta heavy chain, flagellar inner arm i1 complex (511 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar associated protein (15 kDa, Protein from Chlamydomonas reinhardtii)
- Cilia- and flagella-associated protein 61 (121 kDa, Protein from Chlamydomonas reinhardtii)
- Fap251 (97 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar radial spoke protein 1 (87 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown (2 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein 18 kda light chain, flagellar outer arm (17 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein light chain roadblock lc7a (11 kDa, Protein from Chlamydomonas reinhardtii)
- Aaa+ atpase domain-containing protein (464 kDa, Protein from Chlamydomonas reinhardtii)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Atpase aaa-type core domain-containing protein (94 kDa, Protein from Chlamydomonas reinhardtii)
- Peptidyl-prolyl cis-trans isomerase (19 kDa, Protein from Chlamydomonas reinhardtii)
- Coiled-coil protein associated with protofilament ribbons (42 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar associated protein (32 kDa, Protein from Chlamydomonas reinhardtii)
- Outer dynein arm-docking complex protein dc3 (21 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein regulatory complex subunit 6 (28 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein light chain 10 (12 kDa, Protein from Chlamydomonas reinhardtii)
- Duf4201 domain-containing protein (45 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein axonemal light chain 1 (22 kDa, Protein from Chlamydomonas reinhardtii)
- Outer dynein arm-docking complex subunit 1 (83 kDa, Protein from Chlamydomonas reinhardtii)
- Radial spoke protein 15 (35 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein regulatory complex protein 9 (46 kDa, Protein from Chlamydomonas reinhardtii)
- Fap210 (53 kDa, Protein from Chlamydomonas reinhardtii)
- Subunit of axonemal inner dynein (46 kDa, Protein from Chlamydomonas reinhardtii)
- 96-nm repeat unit of doublet microtubules from the flagella of chlamydomonas reinhardtii (Complex from Chlamydomonas reinhardtii)
- Flagellar radial spoke protein 5 (55 kDa, Protein from Chlamydomonas reinhardtii)
- Axonemal inner arm dynein i1/f subunit (31 kDa, Protein from Chlamydomonas reinhardtii)
- Actin (41 kDa, Protein from Chlamydomonas reinhardtii)
- Axonemal inner arm i1 intermediate chain dynein ic138 (111 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar associated protein (39 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar associated protein (12 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar associated protein (16 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar associated protein (27 kDa, Protein from Chlamydomonas reinhardtii)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Cytochrome b5 heme-binding domain-containing protein (26 kDa, Protein from Chlamydomonas reinhardtii)
- Fap166 (23 kDa, Protein from Chlamydomonas reinhardtii)
- Cilia- and flagella-associated protein 20 (22 kDa, Protein from Chlamydomonas reinhardtii)
- Fap1 (21 kDa, Protein from Chlamydomonas reinhardtii)
- Radial spoke protein 10 (23 kDa, Protein from Chlamydomonas reinhardtii)
- Radial spoke protein 11 (21 kDa, Protein from Chlamydomonas reinhardtii)
- Heavy chain alpha (504 kDa, Protein from Chlamydomonas reinhardtii)
- Cilia- and flagella-associated protein 45 (59 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar radial spoke protein 2 (77 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein regulatory complex subunit 4 (55 kDa, Protein from Chlamydomonas reinhardtii)
- Radial spoke protein 16 (39 kDa, Protein from Chlamydomonas reinhardtii)
- Fap43 (199 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar associated protein (22 kDa, Protein from Chlamydomonas reinhardtii)
- Fap143 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Nucleoside diphosphate kinase 6 (61 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein 11 kda light chain, flagellar outer arm (13 kDa, Protein from Chlamydomonas reinhardtii)
- Aaa+ atpase domain-containing protein (470 kDa, Protein from Chlamydomonas reinhardtii)
- Magnesium ion (24 Da, Ligand)
- Fap34 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar associated protein (27 kDa, Protein from Chlamydomonas reinhardtii)
- Radial spike protein 8 (40 kDa, Protein from Chlamydomonas reinhardtii)
- Meiosis-specific nuclear structural protein 1 (59 kDa, Protein from Chlamydomonas reinhardtii)
- Cilia- and flagella-associated protein 73 (35 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar associated protein (267 kDa, Protein from Chlamydomonas reinhardtii)
- Radial spoke protein 3 (56 kDa, Protein from Chlamydomonas reinhardtii)
- Caltractin (19 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar associated protein (43 kDa, Protein from Chlamydomonas reinhardtii)
- Fap44 (222 kDa, Protein from Chlamydomonas reinhardtii)
- Radial spoke protein 9 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar associated protein (48 kDa, Protein from Chlamydomonas reinhardtii)
- Ic97/casc1 n-terminal domain-containing protein (81 kDa, Protein from Chlamydomonas reinhardtii)
- Outer dynein arm protein 1 (62 kDa, Protein from Chlamydomonas reinhardtii)
- Fap253 (75 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein regulatory complex protein 1 (79 kDa, Protein from Chlamydomonas reinhardtii)
- Wd_repeats_region domain-containing protein (63 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar-associated protein 59 (105 kDa, Protein from Chlamydomonas reinhardtii)
- 28 kda inner dynein arm light chain, axonemal (28 kDa, Protein from Chlamydomonas reinhardtii)
- Tubulin beta (49 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein light chain roadblock lc7b (11 kDa, Protein from Chlamydomonas reinhardtii)
- Cilia- and flagella-associated protein 299 (27 kDa, Protein from Chlamydomonas reinhardtii)
- Fap52 (68 kDa, Protein from Chlamydomonas reinhardtii)
- Inner-arm dynein f/i1 light chain (26 kDa, Protein from Chlamydomonas reinhardtii)
- Cilia- and flagella-associated protein 77 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar associated protein (26 kDa, Protein from Chlamydomonas reinhardtii)
- Dhc_n2 domain-containing protein (465 kDa, Protein from Chlamydomonas reinhardtii)
- Pacrg (34 kDa, Protein from Chlamydomonas reinhardtii)
- Protofilament ribbon protein of flagellar microtubules (72 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein, 78 kda intermediate chain, flagellar outer arm (76 kDa, Protein from Chlamydomonas reinhardtii)
- Radial spoke protein 7 (54 kDa, Protein from Chlamydomonas reinhardtii)
- Fap385 (8 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein regulatory complex subunit 3 (60 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar-associated protein 172 (101 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown (6 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar associated protein (53 kDa, Protein from Chlamydomonas reinhardtii)
- Dynein regulatory complex protein 10 (40 kDa, Protein from Chlamydomonas reinhardtii)
- Cilia- and flagella-associated protein 58 (102 kDa, Protein from Chlamydomonas reinhardtii)
Cryo-EM structure of Polytomella Complex-I (peripheral arm)
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 7arc
Q-score: 0.563
Klusch N, Senkler J, Yildiz O, Kuhlbrandt W, Braun HP
Plant Cell (2021) 33 pp. 2072-2091 [ Pubmed: 33768254 DOI: doi:10.1093/plcell/koab092 ]
- Psst (18 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- 13 kda (14 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B14.5a (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- 24 kda (30 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- 51 kda (51 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Polytomella complex i - peripheral arm (Complex from Polytomella sp. Pringsheim 198.80)
- Nd9 (25 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Tyky (26 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- S-[2-({n-[(2r)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate (540 Da, Ligand)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- B13 (17 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Sdap2 (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Zinc ion (65 Da, Ligand)
- 39 kda (41 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Water (18 Da, Ligand)
- B14 (16 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Iron/sulfur cluster (351 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- 75 kda (77 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B8 (10 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B17.2 (18 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Flavin mononucleotide (456 Da, Ligand)
- Nd7 (45 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- 18 kda (20 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Cryo-EM structure of Polytomella Complex-I (complete composition)
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 7ard
Q-score: 0.557
Klusch N, Senkler J, Yildiz O, Kuhlbrandt W, Braun HP
Plant Cell (2021) 33 pp. 2072-2091 [ Pubmed: 33768254 DOI: doi:10.1093/plcell/koab092 ]
- Psst (18 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- 13 kda (14 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Mwfe (8 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B14.5a (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- (7s)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
- B9 (4 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- 24 kda (30 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- 51 kda (51 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Cardiolipin (1 kDa, Ligand)
- Nd9 (25 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Tyky (26 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B14.7 (22 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Ca3 (24 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B15 (16 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd6 (15 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd3 (17 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd5 (58 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd4l (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Mnll (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Sdap1 (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nuop7 (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Ca2 (33 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Nuop4 (9 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd1 (31 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- S-[2-({n-[(2r)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate (540 Da, Ligand)
- Aggg (7 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Ashi (16 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Kfyi (12 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- 15 kda (8 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Pgiv (11 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B12 (6 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd2 (41 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B13 (17 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B18 (10 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Sdap2 (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Unknown (4 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Zinc ion (65 Da, Ligand)
- B14.5b (9 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- 39 kda (41 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Cryo-em structure of polytomella complex-i (complete composition) (Complex from Polytomella sp. Pringsheim 198.80)
- Water (18 Da, Ligand)
- Complex i-b22 (14 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B14 (16 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- C1-fdx (23 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nuop5 (15 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Unknown (3 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B16.6 (16 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Iron/sulfur cluster (351 Da, Ligand)
- Pdsw (18 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Cal (31 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nd7 (45 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Phosphatidylethanolamine (734 Da, Ligand)
- 75 kda (77 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Esss (19 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B8 (10 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B17.2 (18 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nuop8 (15 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Flavin mononucleotide (456 Da, Ligand)
- Nd4 (48 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- 18 kda (20 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Atomic structure of the poxvirus transcription pre-initiation complex in the initially melted state
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7amv
Q-score: 0.537
Grimm C, Bartuli J, Boettcher B, Szalay AA, Fischer U
Nat Struct Mol Biol (2021) 28 pp. 779-788 [ DOI: doi:10.1038/s41594-021-00655-w Pubmed: 34556871 ]
- Dna-directed rna polymerase 7 kda subunit (7 kDa, Protein from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 18 kda subunit (17 kDa, Protein from Vaccinia virus GLV-1h68)
- Magnesium ion (24 Da, Ligand)
- Atp-dependent helicase vetfs (73 kDa, Protein from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 19 kda subunit (19 kDa, Protein from Vaccinia virus GLV-1h68)
- Synthetic promoter dna oligomer, template strand (18 kDa, DNA from Vaccinia virus GLV-1h68)
- Vaccinia transcription pre-initiation complex (670 kDa, Complex from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 35 kda subunit (35 kDa, Protein from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase subunit (21 kDa, Protein from Vaccinia virus GLV-1h68)
- Protein h4 (93 kDa, Protein from Vaccinia virus GLV-1h68)
- Etf large subunit (82 kDa, Protein from Vaccinia virus GLV-1h68)
- Zinc ion (65 Da, Ligand)
- Synthetic promoter dna oligomer, non-template strand (18 kDa, DNA from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 147 kda polypeptide (146 kDa, Protein from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 30 kda polypeptide (29 kDa, Protein from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase (133 kDa, Protein from Vaccinia virus GLV-1h68)
Atomic structure of the poxvirus transcription late pre-initiation complex
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 7aof
Q-score: 0.505
Grimm C, Bartuli J, Boettcher B, Szalay AA, Fischer U
Nat Struct Mol Biol (2021) 28 pp. 779-788 [ DOI: doi:10.1038/s41594-021-00655-w Pubmed: 34556871 ]
- Dna-directed rna polymerase 7 kda subunit (7 kDa, Protein from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 18 kda subunit (17 kDa, Protein from Vaccinia virus GLV-1h68)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase 19 kda subunit (19 kDa, Protein from Vaccinia virus GLV-1h68)
- Vaccinia transcription pre-initiation complex (670 kDa, Complex)
- Protein h4 (Complex from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 35 kda subunit (35 kDa, Protein from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase subunit (21 kDa, Protein from Vaccinia virus GLV-1h68)
- Protein h4 (93 kDa, Protein from Vaccinia virus GLV-1h68)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase 30 kda polypeptide (30 kDa, Protein from Vaccinia virus GLV-1h68)
- Vaccinia transcription pre-initiation complex (Complex from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 147 kda polypeptide (146 kDa, Protein from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase (133 kDa, Protein from Vaccinia virus GLV-1h68)
Atomic structure of the poxvirus late initially transcribing complex
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7aoh
Q-score: 0.543
Grimm C, Bartuli J, Boettcher B, Szalay AA, Fischer U
Nat Struct Mol Biol (2021) 28 pp. 779-788 [ DOI: doi:10.1038/s41594-021-00655-w Pubmed: 34556871 ]
- Vaccinia transcription pre-initiation complex (670 kDa, Complex)
- Dna-directed rna polymerase (133 kDa, Protein from Vaccinia virus GLV-1h68)
- Dna (Complex from Vaccinia virus GLV-1h68)
- Magnesium ion (24 Da, Ligand)
- Vaccinia transcription pre-initiation complex (Complex from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 35 kda subunit (35 kDa, Protein from Vaccinia virus GLV-1h68)
- Protein h4 (93 kDa, Protein from Vaccinia virus GLV-1h68)
- Rna (5'-r(p*ap*ap*ap*ap*up*cp*up*ap*up*a)-3') (3 kDa, RNA from Vaccinia virus GLV-1h68)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit (21 kDa, Protein from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 30 kda polypeptide (29 kDa, Protein from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 7 kda subunit (7 kDa, Protein from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 18 kda subunit (17 kDa, Protein from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 19 kda subunit (19 kDa, Protein from Vaccinia virus GLV-1h68)
- Synthetic promoter dna oligomer, template strand (18 kDa, DNA from Vaccinia virus GLV-1h68)
- Synthetic promoter dna oligomer, non-template strand (18 kDa, DNA from Vaccinia virus GLV-1h68)
- Dna-directed rna polymerase 147 kda polypeptide (146 kDa, Protein from Vaccinia virus GLV-1h68)
- Rna (Complex from Vaccinia virus GLV-1h68)
- Nucleoside triphosphatase i (72 kDa, Protein from Vaccinia virus GLV-1h68)